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[172240_x_at]

Description F53H2.2 /REP_DB=WormBase Gene ID /WP=CE19887 /TR=Q9U3E5 /GB=CAB63204.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 18      4grp_total > 47      6grp_total_sub > Decrease      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 117
1 2 3 4 range
A 102
(3)
P 		5.5
(-3)
A 		4.8
(-3)
A 		5.2
(-3)
A 		97
B 101.9
(3)
P 		10.7
(-2.5)
A 		4.1
(-2.9)
A 		1.7
(-3)
A 		100
C 118.5
(3)
P 		2.6
(-3)
A 		1.9
(-3)
A 		13.4
(-2.4)
A 		117
avr 107.5
(3) 		6.3
(-2.8) 		3.6
(-3) 		6.8
(-2.8) 		104

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 74
1 2 3 4 5 6 range
A 79.7
(3)
P 		27.1
(-1.6)
A 		63.1
(1.6)
A 		10.4
(-3)
A 		27
(-1.6)
A 		31.8
(-1.1)
A 		69
B 80.5
(3)
P 		12
(-2.5)
A 		6.4
(-3)
A 		32.3
(-0.9)
A 		23.2
(-1.6)
A 		21.2
(-1.8)
A 		74
C 80.8
(3)
P 		45.3
(-0.1)
A 		11.5
(-3)
A 		54.9
(0.8)
A 		11.1
(-3)
A 		16.1
(-2.6)
A 		70
avr 80.3
(3) 		28.1
(-2.2) 		27
(-2.3) 		32.5
(-1.8) 		20.4
(-3) 		23
(-2.7) 		60
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 39
1 2 3 4 range
A 37.1
(3)
P 		1.2
(-2.9)
A 		1.3
(-2.9)
A 		0.8
(-3)
A 		36
B 32.5
(3)
P 		2.6
(-2.6)
A 		0.9
(-2.9)
A 		0.4
(-3)
A 		32
C 39.2
(3)
P 		0.8
(-3)
A 		0.6
(-3)
A 		2.3
(-2.7)
A 		39
avr 36.3
(3) 		1.5
(-2.9) 		0.9
(-3) 		1.2
(-2.9) 		35

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 28
1 2 3 4 5 6 range
A 14.7
(3)
P 		9.7
(0.5)
A 		13.7
(2.5)
A 		2.6
(-3)
A 		8.2
(-0.2)
A 		7.7
(-0.5)
A 		12
B 28
(3)
P 		4
(-2.5)
A 		1.6
(-3)
A 		8.6
(-1.4)
A 		9.4
(-1.2)
A 		7.9
(-1.6)
A 		26
C 29.9
(3)
P 		13.8
(-0.6)
A 		2.9
(-3)
A 		11
(-1.2)
A 		3.6
(-2.8)
A 		5.4
(-2.4)
A 		27
avr 24.2
(3) 		9.2
(-2) 		6.1
(-3) 		7.4
(-2.6) 		7.1
(-2.7) 		7
(-2.7) 		18
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172240_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14698
Sequence Type Exemplar sequence
Representative Public ID F53H2.2 NCBI
Target Description F53H2.2 /REP_DB=WormBase Gene ID /WP=CE19887 /TR=Q9U3E5 /GB=CAB63204.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075529(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075529 NCBI Caenorhabditis elegans F53H2.2 (F53H2.2) mRNA, complete cds. 11/11 A 
SNAP00000018991 ENSEMBL cdna:SNAP chromosome:CEL140:V:20392147:20406830:1 9/11 None
GENEFINDER00000018993 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:20392147:20394856:1 11/11 None
F53H2.2 ENSEMBL cdna:known chromosome:CEL140:V:20392147:20392783:1 gene:F53H2.2 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:20392146-20392735(+) 98.04 100.0
Public Domain and Genome References
Gene Title
Ensembl F53H2.2
Entrez Gene 180337 Entrez gene
SwissProt Q9U3E5 EMBL-EBI
WormBase CE19887 Wormbase
Functional Annotations
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507930.1 2 5-27,47-66
F53H2.2 2 5-27,47-66
SNAP00000018991 1 7-29
GENEFINDER00000018993 2 7-29,53-75
Sequence
Target Sequence 
>C. ELEGANS:172240_X_AT
atgattcgtgtaattttggtatttttgttggctctggtggcaggttcaatgcagtatggc
tatggatatgggtacccaggaatgatgggcggctaccatggttatccgggaatgatgggc
ggttacggtatgcggcgaatgggttacggtatgggtatgggaatgtaccgtcct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGATTCGTGTAATTTTGGTATTTT 595 45 13 Antisense
TTGGTATTTTTGTTGGCTCTGGTGG 165 709 28 Antisense
GTTGGCTCTGGTGGCAGGTTCAATG 9 437 39 Antisense
GGTGGCAGGTTCAATGCAGTATGGC 95 499 48 Antisense
ATGGCTATGGATATGGGTACCCAGG 207 51 68 Antisense
GGGTACCCAGGAATGATGGGCGGCT 236 497 82 Antisense
TGATGGGCGGCTACCATGGTTATCC 407 565 95 Antisense
GGCTACCATGGTTATCCGGGAATGA 201 539 103 Antisense
ATGATGGGCGGTTACGGTATGCGGC 89 43 124 Antisense
GCGGCGAATGGGTTACGGTATGGGT 278 293 144 Antisense
TATGGGTATGGGAATGTACCGTCCT 438 651 162 Antisense
Sequence Source Affymetrix Proprietary Database