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[172239_x_at]

Description F22D6.7 /REP_DB=WormBase Gene ID /WP=CE05688 /TR=Q19728 /GB=CAA95815.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 60      4grp_total > 02      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 85
1 2 3 4 range
A 18.7
(-2.8)
A 		23.8
(-2.1)
A 		17.3
(-3)
A 		59.6
(3)
M 		42
B 30.8
(-0.6)
A 		6.5
(-3)
A 		34.7
(-0.2)
P 		67.3
(3)
P 		61
C 1.1
(-3)
A 		21
(-1.6)
A 		1.2
(-3)
A 		86.3
(3)
P 		85
avr 16.9
(-3) 		17.1
(-3) 		17.7
(-2.9) 		71.1
(3) 		54

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 84
1 2 3 4 5 6 range
A 29.8
(3)
A 		10.7
(-1.2)
A 		18.8
(0.6)
M 		5.3
(-2.4)
A 		19.9
(0.8)
A 		2.7
(-3)
A 		27
B 30.8
(2)
P 		34.8
(3)
P 		27.3
(1.1)
P 		10.5
(-3)
A 		18
(-1.1)
A 		12.2
(-2.6)
A 		24
C 12.5
(-2.7)
A 		25.3
(-1.7)
A 		17.5
(-2.3)
A 		86.4
(3)
A 		8.1
(-3)
A 		28.9
(-1.4)
M 		78
avr 24.4
(0) 		23.6
(-0.2) 		21.2
(-1) 		34.1
(3) 		15.3
(-2.8) 		14.6
(-3) 		20
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 6.8
(0.3)
A 		5.2
(-2)
A 		4.5
(-3)
A 		8.7
(3)
M 		4
B 9.8
(0.8)
A 		1.6
(-3)
A 		8
(0)
P 		14.4
(3)
P 		13
C 0.4
(-3)
A 		6.1
(-0.6)
A 		0.4
(-3)
A 		14.5
(3)
P 		14
avr 5.7
(-2) 		4.3
(-3) 		4.3
(-3) 		12.5
(3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 5.5
(2.4)
A 		3.8
(0.5)
A 		4.1
(0.8)
M 		1.3
(-2.3)
A 		6
(3)
A 		0.7
(-3)
A 		5
B 10.7
(2.4)
P 		11.6
(3)
P 		6.6
(-0.4)
P 		2.8
(-3)
A 		7.3
(0.1)
A 		4.6
(-1.8)
A 		9
C 4.6
(-2.2)
A 		7.7
(-0.9)
A 		4.5
(-2.2)
A 		17.4
(3)
A 		2.6
(-3)
A 		9.7
(-0.1)
M 		15
avr 6.9
(1.2) 		7.7
(3) 		5.1
(-2.8) 		7.2
(1.9) 		5.3
(-2.3) 		5
(-3) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172239_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2157
Sequence Type Exemplar sequence
Representative Public ID F22D6.7 NCBI
Target Description F22D6.7 /REP_DB=WormBase Gene ID /WP=CE05688 /TR=Q19728 /GB=CAA95815.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059610(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059610 NCBI Caenorhabditis elegans F22D6.7 (F22D6.7) mRNA, complete cds. 11/11 None
F22D6.7 ENSEMBL cdna:known chromosome:CEL140:I:7107899:7108033:-1 gene:F22D6.7 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_059608 1/11 Cross Hyb Matching Probes None
F22D6.6 1/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:11939224-11939348(+) 90.37 90.37
chrIII:6982035-6982159(+) 90.37 90.37
chrIII:4749292-4749416(+) 90.37 90.37
chrI:7107829-7107964(-) 76.3 100.0
chrIII:6985226-6985361(-) 74.81 98.52
chrIII:11940103-11940227(-) 90.37 90.37
Public Domain and Genome References
Gene Title
Ensembl F22D6.7
Entrez Gene 184828 Entrez gene
SwissProt Q19728 EMBL-EBI
WormBase CE05688 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA95815 Hypothetical protein F22D6.7 [Caenorhabditis elegans] ref|NP_492011.1| F22D6.7 [Caenorhabditis elegans] 9.0E-19
blast T26000 hypothetical protein VB0393L.1 - Caenorhabditis elegans (fragment) 7.0E-11
blast T21264 hypothetical protein F22D6.13 - Caenorhabditis elegans 2.0E-9
Sequence
Target Sequence 
>C. ELEGANS:172239_X_AT
gcaagtgaatttttcgtcatttctcgacaatttttttgcaatgcaagtgtgcagagaaat
gacgagaaatgacgtgaaattcgcaatttctccgcaatttct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCAAGTGAATTTTTCGTCATTTCTC 335 321 15 Antisense
GTGAATTTTTCGTCATTTCTCGACA 583 481 19 Antisense
AATTTTTCGTCATTTCTCGACAATT 329 175 22 Antisense
TTCGTCATTTCTCGACAATTTTTTT 178 695 27 Antisense
GTCATTTCTCGACAATTTTTTTGCA 60 467 30 Antisense
TTCTCGACAATTTTTTTGCAATGCA 669 691 35 Antisense
TTTTTGCAATGCAAGTGTGCAGAGA 122 675 47 Antisense
GCAAGTGTGCAGAGAAATGACGAGA 92 321 57 Antisense
GACGAGAAATGACGTGAAATTCGCA 567 377 75 Antisense
GAAATTCGCAATTTCTCCGCAATTT 543 363 90 Antisense
AATTCGCAATTTCTCCGCAATTTCT 677 177 92 Antisense
Sequence Source Affymetrix Proprietary Database