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[172238_x_at]

Description K07A1.5 /REP_DB=WormBase Gene ID /WP=CE11848 /TR=O01340 /GB=CAB03167.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 88      4grp_total > 42      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 115
1 2 3 4 range
A 60.9
(-3)
A 		109
(3)
A 		78.6
(-0.8)
A 		81.6
(-0.4)
A 		48
B 47.9
(-3)
A 		115.4
(3)
A 		97.5
(1.4)
A 		60.7
(-1.9)
A 		68
C 10.4
(-3)
A 		125.1
(3)
A 		59.5
(-0.4)
A 		99.6
(1.7)
A 		115
avr 39.7
(-3) 		116.5
(3) 		78.5
(0) 		80.6
(0.2) 		77

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 378
1 2 3 4 5 6 range
A 62.9
(-2.5)
A 		54.6
(-2.6)
A 		80.9
(-2.2)
A 		31.2
(-3)
A 		215.4
(0)
P 		393.8
(3)
M 		363
B 54
(-2.4)
A 		56.5
(-2.3)
A 		26.5
(-3)
A 		97
(-1.4)
A 		228.4
(1.7)
P 		286.8
(3)
P 		260
C 15.7
(-3)
A 		16.2
(-3)
A 		76.9
(-1.7)
A 		87.1
(-1.5)
A 		192.1
(0.8)
P 		293.8
(3)
P 		278
avr 44.2
(-3) 		42.4
(-3) 		61.4
(-2.6) 		71.8
(-2.4) 		212
(0.6) 		324.8
(3) 		282
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 33
1 2 3 4 range
A 22.2
(2.2)
A 		23.7
(3)
A 		20.5
(1.4)
A 		12
(-3)
A 		12
B 15.3
(-2.1)
A 		28.5
(3)
A 		22.6
(0.7)
A 		12.9
(-3)
A 		16
C 3.4
(-3)
A 		36
(3)
A 		20.7
(0.2)
A 		16.8
(-0.5)
A 		33
avr 13.6
(-3) 		29.4
(3) 		21.3
(-0.1) 		13.9
(-2.9) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 102
1 2 3 4 5 6 range
A 11.6
(-2.7)
A 		19.4
(-2.2)
A 		17.6
(-2.3)
A 		7.9
(-3)
A 		65
(0.9)
P 		95.9
(3)
M 		88
B 18.8
(-2.3)
A 		18.8
(-2.3)
A 		6.4
(-3)
A 		25.7
(-1.8)
A 		92.8
(2.2)
P 		106.9
(3)
P 		101
C 5.8
(-2.9)
A 		4.9
(-3)
A 		19.6
(-2.1)
A 		17.5
(-2.2)
A 		62.2
(0.7)
P 		98.3
(3)
P 		93
avr 12.1
(-3) 		14.4
(-2.8) 		14.5
(-2.8) 		17
(-2.7) 		73.3
(1.2) 		100.4
(3) 		88
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172238_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2510
Sequence Type Exemplar sequence
Representative Public ID K07A1.5 NCBI
Target Description K07A1.5 /REP_DB=WormBase Gene ID /WP=CE11848 /TR=O01340 /GB=CAB03167.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060144(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060144 NCBI Caenorhabditis elegans K07A1.5 (K07A1.5) mRNA, complete cds. 11/11 None
SNAP00000041847 ENSEMBL cdna:SNAP chromosome:CEL140:I:9598746:9599903:1 11/11 None
GENEFINDER00000041863 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:9598746:9599903:1 11/11 None
K07A1.5 ENSEMBL cdna:known chromosome:CEL140:I:9598718:9599905:1 gene:K07A1.5 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_060177 5/11 Cross Hyb Matching Probes A 
NM_060136 5/11 Cross Hyb Matching Probes A 
NM_060137 7/11 Cross Hyb Matching Probes A 
SNAP00000037404 8/11 Cross Hyb Matching Probes None
GENEFINDER00000037415 8/11 Cross Hyb Matching Probes None
SNAP00000041482 5/11 Cross Hyb Matching Probes None
GENEFINDER00000041485 5/11 Cross Hyb Matching Probes None
SNAP00000043165 2/11 Cross Hyb Matching Probes None
C36F7.5 5/11 Cross Hyb Matching Probes A 
F42H11.1 7/11 Cross Hyb Matching Probes A 
C04F12.6 5/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:9598676-9599834(+) 100.0 100.0
chrI:9700753-9701833(-) 92.14 92.14
Public Domain and Genome References
Gene Title
Ensembl K07A1.5
Entrez Gene 172796 Entrez gene
SwissProt O01340 EMBL-EBI
WormBase CE11848 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03167 Hypothetical protein K07A1.5 [Caenorhabditis elegans] ref|NP_492545.1| K07A1.5 [Caenorhabditis elegans] 8.0E-88
blast CAB02820 Hypothetical protein F42H11.1 [Caenorhabditis elegans] emb|CAB05721.1| Hypothetical protein F42H11.1 [Caenorhabditis elegans] ref|NP_492538.1| F42H11.1 [Caenorhabditis elegans] 6.0E-67
blast CAE56703 Hypothetical protein CBG24488 [Caenorhabditis briggsae] 1.0E-63
Protein Domains
Database ID Description E-Value
Pfam IPR004296 EMBL-EBI Protein of unknown function DUF236 5.0E-115
Pfam IPR004296 EMBL-EBI Protein of unknown function DUF236 7.0E-23
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_492545.1 1 7-29
K07A1.5 1 7-29
SNAP00000041847 1 7-29
GENEFINDER00000041863 1 7-29
Sequence
Target Sequence 
>C. ELEGANS:172238_X_AT
acctccaatggctggaactcacgatccaaactaccaaactcttgctggaattggcaatga
ttgtttcgaaaagaaggatggagcaccagctgccggaggaggaggaccagctccaccagc
gaatgcaaaacccggaatggcagcaacccacgacccgaactatcaaacattggctggatt
gaataacaacgtatttggaaagaaggatggtgctgctccagctgcaggcggtggaggtcc
agctgttccagctgatcagaatgcaaaagcagctactcacgatccgaattatcagacatt
ggctggattgaataataatgtttttgataagaaggatggtggaggtgctcctgctgcggc
tcctgctgctgctggaggagacaagaaaccaattcaaccgaatgataaaaacaagaaggc
tgctacgatggatcctaattatcagacactggctgcagttggaggagatgtattcggagc
tgataagaaagctggaggaggaggtggagataagaagccaattcagccgaataacaaggg
tcaaaaggcagcaaccatggatccaaact

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACCTCCAATGGCTGGAACTCACGAT 472 69 276 Antisense
AACTCACGATCCAAACTACCAAACT 130 141 291 Antisense
GCACCAGCTGCCGGAGGAGGAGGAC 262 315 358 Antisense
AGCTCCACCAGCGAATGCAAAACCC 171 81 384 Antisense
GCAAAACCCGGAATGGCAGCAACCC 293 317 400 Antisense
CCACGACCCGAACTATCAAACATTG 345 273 423 Antisense
AGAAGGATGGTGCTGCTCCAGCTGC 530 75 476 Antisense
GGAGGTCCAGCTGTTCCAGCTGATC 63 517 508 Antisense
AAGCAGCTACTCACGATCCGAATTA 685 149 542 Antisense
GAAGGCTGCTACGATGGATCCTAAT 529 331 690 Antisense
AAGGCAGCAACCATGGATCCAAACT 61 161 820 Antisense
Sequence Source Affymetrix Proprietary Database