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[172236_x_at]

Description T24F1.5 /REP_DB=WormBase Gene ID /WP=CE02365 /TR=Q22746 /GB=CAA90139.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 20      6grp_high1_10_10 > 22      4grp_highest_8_8 > 39      4grp_high_8_8 > 04      6grp_highest_nonorm > 12      6grp_total > 13      4grp_total > 05      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4738
1 2 3 4 range
A 2693.4
(-0.8)
P 		1482.8
(-2.5)
P 		1161.3
(-3)
P 		5424.7
(3)
P 		4263
B 2742.9
(-0.9)
P 		1339.6
(-2.7)
P 		1106.6
(-3)
P 		5792.6
(3)
P 		4686
C 2790.4
(-0.2)
P 		1400.8
(-2.4)
P 		1054.3
(-3)
P 		4833.6
(3)
P 		3779
avr 2742.2
(-0.7) 		1407.7
(-2.6) 		1107.4
(-3) 		5350.3
(3) 		4243

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1691
1 2 3 4 5 6 range
A 2640.5
(3)
P 		2058
(0.7)
P 		2123.9
(0.9)
P 		1811.6
(-0.3)
P 		1679.8
(-0.8)
P 		1132.7
(-3)
P 		1508
B 2083
(2.5)
P 		2171.1
(3)
P 		1707
(0.6)
P 		1661.5
(0.4)
P 		1623.6
(0.2)
P 		1001.7
(-3)
P 		1169
C 1979.1
(2.3)
P 		2113.5
(3)
P 		1929.5
(2.1)
P 		1988.9
(2.4)
P 		1760.4
(1.2)
P 		949.9
(-3)
P 		1164
avr 2234.2
(3) 		2114.2
(2.4) 		1920.1
(1.4) 		1820.7
(0.9) 		1687.9
(0.3) 		1028.1
(-3) 		1206
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 978
1 2 3 4 range
A 980.7
(3)
P 		321.9
(-2.8)
P 		303.6
(-3)
P 		794.1
(1.3)
P 		677
B 874.7
(0.8)
P 		330.8
(-2.5)
P 		256.4
(-3)
P 		1234.4
(3)
P 		978
C 923.7
(3)
P 		402.7
(-2.6)
P 		367.5
(-3)
P 		815
(1.8)
P 		556
avr 926.4
(2.8) 		351.8
(-2.6) 		309.2
(-3) 		947.8
(3) 		639

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 458
1 2 3 4 5 6 range
A 486.7
(-0.2)
P 		731.9
(3)
P 		462.5
(-0.5)
P 		459.5
(-0.6)
P 		506.9
(0)
P 		275.8
(-3)
P 		456
B 724.8
(3)
P 		722.7
(3)
P 		414.5
(-2.3)
P 		440.1
(-1.9)
P 		659.6
(1.9)
P 		373.5
(-3)
P 		351
C 733.6
(3)
P 		644.9
(1.7)
P 		491.1
(-0.5)
P 		400
(-1.8)
P 		569.6
(0.6)
P 		318
(-3)
P 		416
avr 648.4
(2.2) 		699.8
(3) 		456
(-0.9) 		433.2
(-1.2) 		578.7
(1.1) 		322.4
(-3) 		377
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172236_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2725
Sequence Type Exemplar sequence
Representative Public ID T24F1.5 NCBI
Target Description T24F1.5 /REP_DB=WormBase Gene ID /WP=CE02365 /TR=Q22746 /GB=CAA90139.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064018(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064018 NCBI Caenorhabditis elegans T24F1.5 (T24F1.5) mRNA, complete cds. 11/11 None
SNAP00000017164 ENSEMBL cdna:SNAP chromosome:CEL140:II:11319340:11319583:-1 11/11 None
T24F1.5 ENSEMBL cdna:known chromosome:CEL140:II:11319131:11319583:-1 gene:T24F1.5 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000017168 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:11319336-11319580(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T24F1.5
Entrez Gene 174729 Entrez gene
SwissProt Q22746 EMBL-EBI
WormBase CE02365 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA90139 Hypothetical protein T24F1.5 [Caenorhabditis elegans] ref|NP_496419.1| T24F1.5 [Caenorhabditis elegans] 7.0E-24
blast CAE59532 Hypothetical protein CBG02927 [Caenorhabditis briggsae] 6.0E-22
Sequence
Target Sequence 
>C. ELEGANS:172236_X_AT
ccatcaagtgactaccaacctcgataccggaaaagtcagactcaagaagccaacatccag
ccattcattcgattccgtaaatcgactcaaccccagcataactggatgttc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCATCAAGTGACTACCAACCTCGAT 196 271 67 Antisense
ATCAAGTGACTACCAACCTCGATAC 157 27 69 Antisense
CCAACCTCGATACCGGAAAAGTCAG 70 269 81 Antisense
CTCGATACCGGAAAAGTCAGACTCA 136 109 86 Antisense
GTCAGACTCAAGAAGCCAACATCCA 142 467 101 Antisense
TCAAGAAGCCAACATCCAGCCATTC 239 629 108 Antisense
CAACATCCAGCCATTCATTCGATTC 215 189 117 Antisense
CCAGCCATTCATTCGATTCCGTAAA 106 273 123 Antisense
TCGATTCCGTAAATCGACTCAACCC 604 603 135 Antisense
TCGACTCAACCCCAGCATAACTGGA 315 601 148 Antisense
TCAACCCCAGCATAACTGGATGTTC 683 629 153 Antisense
Sequence Source Affymetrix Proprietary Database