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[172235_x_at]

Description ZK84.5 /REP_DB=WormBase Gene ID /WP=CE02928 /TR=Q23634 /GB=AAC48207.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 87      4grp_total > 46      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 33
1 2 3 4 range
A 37.3
(3)
A 		7.1
(-2.7)
A 		8.8
(-2.4)
A 		5.4
(-3)
A 		32
B 4.6
(-3)
A 		6.6
(0.4)
A 		8.1
(3)
A 		6.2
(-0.3)
A 		4
C 5.3
(-2.8)
A 		14.3
(3)
A 		5
(-3)
A 		6.2
(-2.2)
A 		9
avr 15.7
(3) 		9.3
(-0.9) 		7.3
(-2.1) 		5.9
(-3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 135
1 2 3 4 5 6 range
A 7.7
(-2.7)
A 		5.1
(-3)
A 		4.7
(-3)
A 		59.5
(3)
A 		59.5
(3)
A 		54.2
(2.4)
A 		55
B 40.6
(3)
A 		5.1
(-2.5)
A 		4.8
(-2.6)
A 		2
(-3)
A 		14.1
(-1.1)
A 		40.4
(3)
A 		39
C 2.9
(-3)
A 		18.1
(-2.3)
A 		3.2
(-3)
A 		6.8
(-2.8)
A 		40.8
(-1.3)
A 		137
(3)
A 		134
avr 17.1
(-1.9) 		9.4
(-2.6) 		4.2
(-3) 		22.8
(-1.5) 		38.1
(-0.2) 		77.2
(3) 		73
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 13.6
(3)
A 		1.5
(-2.7)
A 		2.3
(-2.3)
A 		0.8
(-3)
A 		13
B 1.5
(-1)
A 		1.6
(0)
A 		1.9
(3)
A 		1.3
(-3)
A 		1
C 1.8
(-1.5)
A 		4.1
(3)
A 		1.7
(-1.6)
A 		1
(-3)
A 		3
avr 5.6
(3) 		2.4
(-1.2) 		2
(-1.7) 		1
(-3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 45
1 2 3 4 5 6 range
A 1.4
(-2.9)
A 		1.8
(-2.7)
A 		1
(-3)
A 		15.1
(2)
A 		18
(3)
A 		13.2
(1.3)
A 		17
B 14.1
(2.6)
A 		1.7
(-2.5)
A 		1.2
(-2.7)
A 		0.5
(-3)
A 		5.7
(-0.9)
A 		15.1
(3)
A 		15
C 1.1
(-3)
A 		5.5
(-2.4)
A 		0.8
(-3)
A 		1.4
(-2.9)
A 		13.2
(-1.4)
A 		45.9
(3)
A 		45
avr 5.5
(-1.9) 		3
(-2.5) 		1
(-3) 		5.7
(-1.8) 		12.3
(-0.1) 		24.7
(3) 		24
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172235_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4158
Sequence Type Exemplar sequence
Representative Public ID ZK84.5 NCBI
Target Description ZK84.5 /REP_DB=WormBase Gene ID /WP=CE02928 /TR=Q23634 /GB=AAC48207.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062800(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062800 NCBI Caenorhabditis elegans ZK84.5 (ZK84.5) mRNA, complete cds. 11/11 None
SNAP00000003785 ENSEMBL cdna:SNAP chromosome:CEL140:II:6016212:6016466:-1 11/11 None
GENEFINDER00000003789 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:6016212:6016466:-1 11/11 None
ZK84.5 ENSEMBL cdna:known chromosome:CEL140:II:6016212:6016466:-1 gene:ZK84.5 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000029369 3/11 Cross Hyb Matching Probes None
GENEFINDER00000029379 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:6016208-6016463(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZK84.5
Entrez Gene 191219 Entrez gene
SwissProt Q23634 EMBL-EBI
WormBase CE02928 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC48207 Hypothetical protein ZK84.5 [Caenorhabditis elegans] ref|NP_495201.1| ZK84.5 [Caenorhabditis elegans] 1.0E-26
blast T33847 hypothetical protein Y44E3A.6 - Caenorhabditis elegans 2.0E-10
blast T33818 hypothetical protein W05F2.1 - Caenorhabditis elegans (fragment) 2.0E-10
Sequence
Target Sequence 
>C. ELEGANS:172235_X_AT
aaacattgaactcgaagagcattcgtaaaggtccgaatccaaataaagtcgttatccaag
acaatggccatgagaagaagacggcgccagctgcaccgacgccaaagaccgaagtgaccg
cgccaccgccgaccgaaggattcaagattaaggatgaggtggagatgcttcgtgccggat
tcaagaacaagcatggag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAACATTGAACTCGAAGAGCATTCG 456 127 26 Antisense
GAGCATTCGTAAAGGTCCGAATCCA 636 387 42 Antisense
GAATCCAAATAAAGTCGTTATCCAA 57 331 60 Antisense
GTCGTTATCCAAGACAATGGCCATG 687 471 73 Antisense
TGAGAAGAAGACGGCGCCAGCTGCA 269 569 96 Antisense
TGCACCGACGCCAAAGACCGAAGTG 669 573 117 Antisense
CGCCAAAGACCGAAGTGACCGCGCC 427 257 125 Antisense
CACCGCCGACCGAAGGATTCAAGAT 606 199 149 Antisense
GATGAGGTGGAGATGCTTCGTGCCG 432 411 178 Antisense
GATGCTTCGTGCCGGATTCAAGAAC 117 413 189 Antisense
GCCGGATTCAAGAACAAGCATGGAG 549 283 199 Antisense
Sequence Source Affymetrix Proprietary Database