[Home] | [Total List]

[172234_x_at]

Description C41G7.6 /REP_DB=WormBase Gene ID /WP=CE17540 /TR=Q93370 /GB=CAB02844.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 79      4grp_total > 26      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 73
1 2 3 4 range
A 7.4
(-3)
A 		39.1
(0.9)
A 		28.4
(-0.4)
A 		56.4
(3)
A 		49
B 10
(-2.6)
A 		59
(3)
A 		6.9
(-3)
A 		9.4
(-2.7)
A 		52
C 7.2
(-3)
A 		22
(-1.8)
A 		22.7
(-1.7)
A 		79.6
(3)
A 		72
avr 8.2
(-3) 		40
(1.7) 		19.3
(-1.3) 		48.5
(3) 		40

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 158
1 2 3 4 5 6 range
A 57.9
(-1.2)
A 		15.8
(-2.9)
A 		43.2
(-1.8)
A 		14.4
(-3)
A 		67.9
(-0.8)
A 		161.9
(3)
P 		148
B 46.8
(-1.3)
A 		43.8
(-1.5)
A 		6.4
(-3)
A 		24
(-2.3)
A 		63.9
(-0.6)
P 		152.4
(3)
P 		146
C 4.4
(-3)
A 		10.2
(-2.8)
A 		7.9
(-2.9)
A 		16.6
(-2.5)
A 		89.5
(0.5)
P 		148.7
(3)
P 		144
avr 36.4
(-2.2) 		23.3
(-2.8) 		19.2
(-3) 		18.3
(-3) 		73.8
(-0.6) 		154.3
(3) 		136
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 2.7
(-3)
A 		8.5
(3)
A 		7.4
(1.9)
A 		8.3
(2.8)
A 		6
B 3.2
(-2.3)
A 		14.6
(3)
A 		1.6
(-3)
A 		2
(-2.8)
A 		13
C 2.4
(-3)
A 		6.3
(-0.9)
A 		7.9
(0)
A 		13.4
(3)
A 		11
avr 2.8
(-3) 		9.8
(3) 		5.6
(-0.6) 		7.9
(1.4) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 55
1 2 3 4 5 6 range
A 10.7
(-1.8)
A 		5.6
(-2.7)
A 		9.4
(-2)
A 		3.6
(-3)
A 		20.5
(-0.2)
A 		39.4
(3)
P 		36
B 16.3
(-1.4)
A 		14.6
(-1.6)
A 		1.5
(-3)
A 		6.4
(-2.5)
A 		26
(-0.3)
P 		56.8
(3)
P 		55
C 1.6
(-3)
A 		3.1
(-2.8)
A 		2
(-3)
A 		3.3
(-2.8)
A 		29
(0.4)
P 		49.8
(3)
P 		48
avr 9.5
(-2.3) 		7.8
(-2.5) 		4.3
(-3) 		4.4
(-3) 		25.2
(-0.2) 		48.7
(3) 		44
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172234_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.913
Sequence Type Exemplar sequence
Representative Public ID C41G7.6 NCBI
Target Description C41G7.6 /REP_DB=WormBase Gene ID /WP=CE17540 /TR=Q93370 /GB=CAB02844.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060130(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060130 NCBI Caenorhabditis elegans C41G7.6 (C41G7.6) mRNA, complete cds. 11/11 None
SNAP00000008721 ENSEMBL cdna:SNAP chromosome:CEL140:I:9534738:9535502:-1 11/11 None
GENEFINDER00000008730 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:9534738:9535502:-1 11/11 None
C41G7.6 ENSEMBL cdna:known chromosome:CEL140:I:9534663:9535535:-1 gene:C41G7.6 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_068344 2/11 Cross Hyb Matching Probes A 
SNAP00000011358 3/11 Cross Hyb Matching Probes None
SNAP00000011360 2/11 Cross Hyb Matching Probes None
GENEFINDER00000011367 2/11 Cross Hyb Matching Probes None
GENEFINDER00000011372 3/11 Cross Hyb Matching Probes None
Y59E9AL.6 2/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:9534668-9535433(-) 45.91 100.0
Public Domain and Genome References
Gene Title
Ensembl C41G7.6
Entrez Gene 172787 Entrez gene
SwissProt Q93370 EMBL-EBI
WormBase CE17540 Wormbase
Sequence
Target Sequence 
>C. ELEGANS:172234_X_AT
cccacttgctgcgcttattggatgcggaggaaaaaagaaagcaccgccaccaaagtccgc
atccaagatgactgccccaactgctcctgcaccagcgcctcccgctgctccagacgctcc
accagttgctccagatgctgccgctgcgcctgctgatggagaaaagaaggatggcgataa
aaagagtgaaaagaaggaaggagacgagaaaaaggaagaaaagaaagatgaagacaagaa
ggacgagaagaaggacgaggaaaagaaggatggagagaagaagagtgagaaaaaagatga
aaagaaggacgacaagaaggacgacaagaaggatggaaagaaggaggacgaaaagaagga
tgacgaaaagaaggatgaagagaaaaaggacgataagaaagaagacgacaagaaaggtga
caagaaggatgaaaagaaggatgatgagaagaaagacgataagaaagaagccaagtccaa
gtcgaagaagtccaaaaaatccaagaagtccaagaagtccaaacgagaaaagaaagatga
ggataagaaggacgacgacaaaaaggatgacgac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCCACTTGCTGCGCTTATTGGATGC 534 257 57 Antisense
TGCTGCGCTTATTGGATGCGGAGGA 645 581 63 Antisense
AAGTCCGCATCCAAGATGACTGCCC 272 157 109 Antisense
CGCTGCGCCTGCTGATGGAGAAAAG 343 255 198 Antisense
GAAGGACGACAAGAAGGACGACAAG 70 335 360 Antisense
GAAAGAAGCCAAGTCCAAGTCGAAG 346 359 519 Antisense
GCCAAGTCCAAGTCGAAGAAGTCCA 218 275 526 Antisense
GTCCAAAAAATCCAAGAAGTCCAAG 655 475 546 Antisense
GAAGTCCAAGAAGTCCAAACGAGAA 250 335 561 Antisense
AGATGAGGATAAGAAGGACGACGAC 499 53 591 Antisense
GGACGACGACAAAAAGGATGACGAC 444 523 606 Antisense
Sequence Source Affymetrix Proprietary Database