[Home] | [Total List]

[172233_at]

Description T02D1.7 /REP_DB=WormBase Gene ID /WP=CE16327 /TR=O45726 /GB=CAB05905.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 71      4grp_total > 03      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 38
1 2 3 4 range
A 3.2
(-3)
A 		5.3
(-1.3)
A 		7.4
(0.4)
A 		10.7
(3)
A 		8
B 17.2
(0.7)
A 		5.4
(-2.3)
A 		2.9
(-3)
A 		25.8
(3)
A 		23
C 4.9
(-2.7)
A 		6
(-2.6)
A 		3.2
(-3)
A 		40.6
(3)
A 		37
avr 8.4
(-1.9) 		5.6
(-2.7) 		4.5
(-3) 		25.7
(3) 		21

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 54
1 2 3 4 5 6 range
A 8.5
(0.2)
A 		3.8
(-2.4)
A 		2.7
(-3)
A 		13.6
(3)
A 		5.2
(-1.6)
A 		3
(-2.8)
A 		11
B 22.3
(1)
A 		7.3
(-1.9)
A 		32.7
(3)
A 		1.8
(-3)
A 		29.7
(2.4)
A 		14.6
(-0.5)
A 		31
C 1.1
(-3)
A 		36.8
(1)
A 		3.7
(-2.7)
A 		54.7
(3)
A 		5
(-2.6)
A 		2.3
(-2.9)
A 		54
avr 10.6
(-1.6) 		16
(0.4) 		13
(-0.7) 		23.4
(3) 		13.3
(-0.6) 		6.6
(-3) 		17
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 6
1 2 3 4 range
A 1.2
(-2.3)
A 		1.1
(-3)
A 		1.9
(3)
A 		1.6
(0.8)
A 		1
B 5.5
(3)
A 		1.3
(-2.3)
A 		0.7
(-3)
A 		5.5
(3)
A 		5
C 1.6
(-2.5)
A 		1.7
(-2.4)
A 		1.1
(-3)
A 		6.8
(3)
A 		6
avr 2.8
(-0.2) 		1.4
(-2.6) 		1.2
(-3) 		4.6
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 1.6
(-0.9)
A 		1.4
(-1.3)
A 		0.6
(-3)
A 		3.4
(3)
A 		1.6
(-0.9)
A 		0.7
(-2.8)
A 		3
B 7.8
(0.8)
A 		2.4
(-2)
A 		7.9
(0.8)
A 		0.5
(-3)
A 		12.1
(3)
A 		5.4
(-0.5)
A 		12
C 0.4
(-3)
A 		11.2
(3)
A 		0.9
(-2.7)
A 		11
(2.9)
A 		1.6
(-2.3)
A 		0.8
(-2.8)
A 		11
avr 3.3
(-0.9) 		5
(2.8) 		3.1
(-1.3) 		5
(2.8) 		5.1
(3) 		2.3
(-3) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 172233_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9774
Sequence Type Exemplar sequence
Representative Public ID T02D1.7 NCBI
Target Description T02D1.7 /REP_DB=WormBase Gene ID /WP=CE16327 /TR=O45726 /GB=CAB05905.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070705(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070705 NCBI Caenorhabditis elegans T02D1.7 (T02D1.7) mRNA, complete cds. 11/11 None
SNAP00000012309 ENSEMBL cdna:SNAP chromosome:CEL140:IV:17406856:17407080:-1 11/11 None
T02D1.7 ENSEMBL cdna:known chromosome:CEL140:IV:17406856:17407080:-1 gene:T02D1.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:17406861-17407086(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T02D1.7
Entrez Gene 187985 Entrez gene
SwissProt O45726 EMBL-EBI
WormBase CE16327 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB05905 Hypothetical protein T02D1.7 [Caenorhabditis elegans] ref|NP_503106.1| T02D1.7 [Caenorhabditis elegans] 5.0E-23
blast CAE17981 Hypothetical protein Y116A8C.44 [Caenorhabditis elegans] ref|NP_001023433.1| Y116A8C.44 [Caenorhabditis elegans] 3.0E-14
blast CAE57425 Hypothetical protein CBG00384 [Caenorhabditis briggsae] 9.0E-13
Sequence
Target Sequence 
>C. ELEGANS:172233_AT
aagccgtcccaagcgatcaagacattgaagctcttatgggtcttcaagaccaggtcaatg
ctttcttgggtgaatccaacatgagtccagaagcaaagaagaaaattgaagatatgatgg
ccaagaaacaagct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGCCGTCCCAAGCGATCAAGACAT 154 147 74 Antisense
CGTCCCAAGCGATCAAGACATTGAA 258 245 78 Antisense
GACATTGAAGCTCTTATGGGTCTTC 393 371 94 Antisense
GAAGCTCTTATGGGTCTTCAAGACC 418 341 100 Antisense
GGGTCTTCAAGACCAGGTCAATGCT 341 497 111 Antisense
AGACCAGGTCAATGCTTTCTTGGGT 96 71 120 Antisense
ACCAGGTCAATGCTTTCTTGGGTGA 29 85 122 Antisense
GTCAATGCTTTCTTGGGTGAATCCA 491 463 127 Antisense
GGGTGAATCCAACATGAGTCCAGAA 549 497 141 Antisense
TGAATCCAACATGAGTCCAGAAGCA 177 575 144 Antisense
AGATATGATGGCCAAGAAACAAGCT 261 63 183 Antisense
Sequence Source Affymetrix Proprietary Database