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[172232_x_at]

Description C40H5.1 /REP_DB=WormBase Gene ID /WP=CE08649 /TR=O17647 /GB=CAB03952.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 95      4grp_total > 02      6grp_cgc > 78      6grp_cgc_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 138
1 2 3 4 range
A 50.5
(-1.8)
P 		32.8
(-3)
A 		57.3
(-1.4)
A 		124.5
(3)
P 		92
B 43.9
(-3)
P 		72.4
(-0.6)
A 		48.8
(-2.6)
A 		115.3
(3)
P 		71
C 38.6
(-3)
A 		38.7
(-3)
A 		44.4
(-2.7)
A 		170.3
(3)
P 		132
avr 44.3
(-3) 		48
(-2.8) 		50.2
(-2.6) 		136.7
(3) 		92

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 337
1 2 3 4 5 6 range
A 46.3
(-3)
A 		67.4
(-2.6)
P 		75
(-2.5)
P 		224.9
(0.3)
P 		265.3
(1.1)
P 		368.8
(3)
P 		323
B 48.4
(-2.9)
A 		55.1
(-2.8)
P 		45.1
(-3)
M 		145.7
(-1.2)
P 		380.5
(3)
P 		336
(2.2)
P 		335
C 43.7
(-3)
A 		57.5
(-2.7)
A 		63
(-2.6)
P 		133.2
(-1.3)
P 		356
(3)
P 		350.2
(2.9)
P 		312
avr 46.1
(-3) 		60
(-2.7) 		61
(-2.7) 		167.9
(-0.6) 		333.9
(2.7) 		351.7
(3) 		306
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 22
1 2 3 4 range
A 18.4
(3)
P 		7.1
(-3)
A 		15
(1.2)
A 		18.2
(2.9)
P 		11
B 14
(-1.8)
P 		17.9
(-0)
A 		11.3
(-3)
A 		24.6
(3)
P 		13
C 12.8
(-2.4)
A 		11.1
(-3)
A 		15.5
(-1.5)
A 		28.7
(3)
P 		18
avr 15.1
(-1.4) 		12
(-3) 		13.9
(-2) 		23.8
(3) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 146
1 2 3 4 5 6 range
A 8.5
(-3)
A 		24
(-1.9)
P 		16.3
(-2.4)
P 		57
(0.6)
P 		80.1
(2.3)
P 		89.8
(3)
P 		81
B 16.8
(-2.8)
A 		18.3
(-2.7)
P 		11
(-3)
M 		38.6
(-1.8)
P 		154.6
(3)
P 		125.3
(1.8)
P 		144
C 16.2
(-3)
A 		17.5
(-2.9)
A 		16
(-3)
P 		26.8
(-2.4)
P 		115.2
(2.9)
P 		117.2
(3)
P 		101
avr 13.8
(-3) 		19.9
(-2.6) 		14.4
(-3) 		40.8
(-1.4) 		116.6
(3) 		110.8
(2.7) 		103
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172232_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16709
Sequence Type Exemplar sequence
Representative Public ID C40H5.1 NCBI
Target Description C40H5.1 /REP_DB=WormBase Gene ID /WP=CE08649 /TR=O17647 /GB=CAB03952.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077564(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077564 NCBI Caenorhabditis elegans Nematode Specific Peptide family/group A family member (nspa-9) (nspa-9) mRNA, complete cds. 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:11738970-11739075(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol nspa-9
Entrez Gene 183368 Entrez gene
WormBase CE08649 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03952 Hypothetical protein C40H5.1 [Caenorhabditis elegans] ref|NP_509965.1| Nematode Specific Peptide family/group A family member (nspa-9) [Caenorhabditis elegans] pir||T19865 hypothetical protein C40H5.1 - Caenorhabditis elegans 1.0E-10
blast CAB01526 Hypothetical protein ZC412.7 [Caenorhabditis elegans] emb|CAI79204.1| Hypothetical protein H12D21.12 [Caenorhabditis elegans] emb|CAB07428.1| Hypothetical protein H12D21.1 [Caenorhabditis elegans] ref|NP_001024007.1| Nematode Specific Peptide family/group A family member (nspa-2) [Caenorhabditis elegans] ref|NP_506666.1| Nematode Specific Peptide family/group A family member (nspa-3) [Caenorhabditis elegans] ref|NP_506669.1| Nematode Specific Peptide family/group A family member (nspa-1) [Caenorhabditis elegans] 3.0E-9
blast CAB01519 Hypothetical protein W06A7.5 [Caenorhabditis elegans] ref|NP_506654.1| Nematode Specific Peptide family/group A family member (nspa-8) [Caenorhabditis elegans] 7.0E-9
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_509965.1 1 4-26
Sequence
Target Sequence 
>C. ELEGANS:172232_X_AT
tccttgttgcttcaactcttgtctacactgcattggcttggattggactcagc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCCTTGTTGCTTCAACTCTTGTCTA 271 591 35 Antisense
TTGTTGCTTCAACTCTTGTCTACAC 213 707 38 Antisense
CTTCAACTCTTGTCTACACTGCATT 281 221 44 Antisense
TTCAACTCTTGTCTACACTGCATTG 138 685 45 Antisense
TCAACTCTTGTCTACACTGCATTGG 349 631 46 Antisense
CAACTCTTGTCTACACTGCATTGGC 470 187 47 Antisense
TCTTGTCTACACTGCATTGGCTTGG 477 617 51 Antisense
CTTGTCTACACTGCATTGGCTTGGA 179 219 52 Antisense
TGTCTACACTGCATTGGCTTGGATT 141 557 54 Antisense
CACTGCATTGGCTTGGATTGGACTC 10 197 60 Antisense
TGCATTGGCTTGGATTGGACTCAGC 245 579 63 Antisense
Sequence Source Affymetrix Proprietary Database