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[172230_at]

Description F48F5.3 /REP_DB=WormBase Gene ID /WP=CE18709 /TR=Q9XV11 /GB=CAB04410.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 53      4grp_total > 04      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 38
1 2 3 4 range
A 1.6
(-2.9)
A 		1
(-3)
A 		2.8
(-2.7)
A 		39.3
(3)
A 		38
B 1.6
(0.2)
A 		1.8
(1.2)
A 		0.9
(-3)
A 		2.2
(3)
A 		1
C 16.1
(2.7)
A 		2.6
(-2.6)
A 		1.6
(-3)
A 		16.9
(3)
A 		15
avr 6.4
(-1.4) 		1.8
(-3) 		1.8
(-3) 		19.5
(3) 		18

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 3.1
(3)
A 		2
(-3)
A 		3
(2.5)
A 		2.6
(0.3)
A 		2.6
(0.3)
A 		2.6
(0.3)
A 		1
B 1.3
(-2.7)
A 		1.7
(-2.5)
A 		11.4
(3)
A 		1
(-2.9)
A 		2.6
(-2)
A 		0.8
(-3)
A 		11
C 1.1
(-2.8)
A 		1.5
(-2.2)
A 		4.7
(3)
A 		2.5
(-0.6)
A 		1
(-3)
A 		1.4
(-2.4)
A 		4
avr 1.8
(-2.8) 		1.7
(-2.9) 		6.4
(3) 		2
(-2.5) 		2.1
(-2.4) 		1.6
(-3) 		5
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 6
1 2 3 4 range
A 0.6
(-2.6)
A 		0.2
(-3)
A 		0.7
(-2.5)
A 		5.8
(3)
A 		6
B 0.5
(3)
A 		0.5
(3)
A 		0.2
(-3)
A 		0.5
(3)
A 		0
C 5.3
(3)
A 		0.8
(-2.6)
A 		0.5
(-3)
A 		2.9
(0)
A 		5
avr 2.1
(0.7) 		0.5
(-3) 		0.5
(-3) 		3.1
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3
1 2 3 4 5 6 range
A 0.6
(-3)
A 		0.7
(-0)
A 		0.7
(-0)
A 		0.7
(-0)
A 		0.8
(3)
A 		0.6
(-3)
A 		0
B 0.5
(-2.5)
A 		0.6
(-2.3)
A 		2.8
(3)
A 		0.3
(-3)
A 		1.1
(-1.1)
A 		0.3
(-3)
A 		3
C 0.4
(-2.3)
A 		0.4
(-2.3)
A 		1.2
(3)
A 		0.5
(-1.7)
A 		0.3
(-3)
A 		0.5
(-1.7)
A 		1
avr 0.5
(-3) 		0.6
(-2.5) 		1.6
(3) 		0.5
(-3) 		0.7
(-1.9) 		0.5
(-3) 		1
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 172230_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12870
Sequence Type Exemplar sequence
Representative Public ID F48F5.3 NCBI
Target Description F48F5.3 /REP_DB=WormBase Gene ID /WP=CE18709 /TR=Q9XV11 /GB=CAB04410.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075533(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075533 NCBI Caenorhabditis elegans F48F5.3 (F48F5.3) mRNA, complete cds. 11/11 None
SNAP00000024990 ENSEMBL cdna:SNAP chromosome:CEL140:V:20446433:20451235:-1 9/11 None
GENEFINDER00000024995 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:20450817:20451235:-1 10/11 None
F48F5.3 ENSEMBL cdna:known chromosome:CEL140:V:20450981:20451235:-1 gene:F48F5.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:20450980-20451235(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F48F5.3
Entrez Gene 185987 Entrez gene
SwissProt Q9XV11 EMBL-EBI
WormBase CE18709 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAE17831 Hypothetical protein F48F5.6 [Caenorhabditis elegans] ref|NP_001023948.1| F48F5.6 [Caenorhabditis elegans] 2.0E-43
blast CAE61701 Hypothetical protein CBG05649 [Caenorhabditis briggsae] 2.0E-33
blast CAB04410 Hypothetical protein F48F5.3 [Caenorhabditis elegans] ref|NP_507934.1| F48F5.3 [Caenorhabditis elegans] 3.0E-31
blast CAB04410 Hypothetical protein F48F5.3 [Caenorhabditis elegans] ref|NP_507934.1| F48F5.3 [Caenorhabditis elegans] 1.0E-17
blast CAB04410 Hypothetical protein F48F5.3 [Caenorhabditis elegans] ref|NP_507934.1| F48F5.3 [Caenorhabditis elegans] 3.0E-17
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
SNAP00000024990 1 85-107
Sequence
Target Sequence 
>C. ELEGANS:172230_AT
gaccgaggaggagacagataagaagtttgaggcactccaacaaatgttgaaacttggcca
gtacgcggatgaatttgatttcgataaaactgaaatcgaggctgaaattaaaggtgagcc
ggagaacgtaagtattattg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACCGAGGAGGAGACAGATAAGAAG 76 381 15 Antisense
TAAGAAGTTTGAGGCACTCCAACAA 175 637 33 Antisense
GTTTGAGGCACTCCAACAAATGTTG 294 445 39 Antisense
AAATGTTGAAACTTGGCCAGTACGC 48 121 56 Antisense
GTTGAAACTTGGCCAGTACGCGGAT 377 437 60 Antisense
AACTTGGCCAGTACGCGGATGAATT 316 139 65 Antisense
TGGCCAGTACGCGGATGAATTTGAT 120 545 69 Antisense
GTACGCGGATGAATTTGATTTCGAT 142 459 75 Antisense
GAAATCGAGGCTGAAATTAAAGGTG 356 285 106 Antisense
TTAAAGGTGAGCCGGAGAACGTAAG 709 139 122 Antisense
GAGCCGGAGAACGTAAGTATTATTG 47 385 130 Antisense
Sequence Source Affymetrix Proprietary Database