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[172227_x_at]

Description K07A1.6 /REP_DB=WormBase Gene ID /WP=CE18856 /TR=P90911 /GB=CAB03176.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 94      4grp_total > 02      6grp_total_sub > Hat      6grp_rule_based > S5      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 141
1 2 3 4 range
A 23.1
(-2.5)
A 		33.5
(-2)
A 		12.4
(-3)
A 		144.5
(3)
P 		132
B 12.1
(-2.3)
A 		3.1
(-3)
A 		24.7
(-1.3)
A 		77.6
(3)
A 		75
C 28.9
(-1.9)
A 		14.6
(-2.8)
A 		11.2
(-3)
A 		108.4
(3)
P 		97
avr 21.4
(-2.7) 		17.1
(-2.9) 		16.1
(-3) 		110.2
(3) 		94

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 641
1 2 3 4 5 6 range
A 48.4
(-2.8)
A 		30.4
(-3)
A 		59.1
(-2.6)
A 		35.9
(-2.9)
A 		519.6
(3)
P 		276.3
(0)
P 		489
B 23.7
(-3)
A 		35.1
(-2.8)
P 		22.3
(-3)
A 		23.6
(-3)
A 		532
(3)
P 		351
(0.9)
P 		510
C 37.3
(-2.9)
A 		42.9
(-2.8)
A 		21.7
(-3)
A 		61.3
(-2.6)
A 		662.8
(3)
P 		308.5
(-0.3)
P 		641
avr 36.5
(-3) 		36.1
(-3) 		34.4
(-3) 		40.3
(-2.9) 		571.5
(3) 		311.9
(0.1) 		537
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 20
1 2 3 4 range
A 8.4
(-1.3)
A 		7.3
(-1.6)
A 		3.2
(-3)
A 		21.1
(3)
P 		18
B 3.8
(-1.9)
A 		0.8
(-3)
A 		5.7
(-1.1)
A 		16.5
(3)
A 		16
C 9.6
(-0.6)
A 		4.2
(-2.9)
A 		3.9
(-3)
A 		18.3
(3)
P 		14
avr 7.3
(-1.7) 		4.1
(-3) 		4.3
(-2.9) 		18.6
(3) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 211
1 2 3 4 5 6 range
A 8.9
(-3)
A 		10.8
(-2.9)
A 		12.9
(-2.8)
A 		9.1
(-3)
A 		156.8
(3)
P 		67.3
(-0.6)
P 		148
B 8.2
(-2.9)
A 		11.7
(-2.8)
P 		5.4
(-3)
A 		6.3
(-3)
A 		216.2
(3)
P 		130.9
(0.6)
P 		211
C 13.8
(-2.8)
A 		13.1
(-2.8)
A 		5.5
(-3)
A 		12.3
(-2.8)
A 		214.5
(3)
P 		103.3
(-0.2)
P 		209
avr 10.3
(-2.9) 		11.9
(-2.9) 		7.9
(-3) 		9.2
(-3) 		195.8
(3) 		100.5
(-0) 		188
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172227_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.407
Sequence Type Exemplar sequence
Representative Public ID K07A1.6 NCBI
Target Description K07A1.6 /REP_DB=WormBase Gene ID /WP=CE18856 /TR=P90911 /GB=CAB03176.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060145(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060145 NCBI Caenorhabditis elegans K07A1.6 (K07A1.6) mRNA, complete cds. 11/11 A 
SNAP00000041848 ENSEMBL cdna:SNAP chromosome:CEL140:I:9600194:9601195:-1 11/11 None
K07A1.6 ENSEMBL cdna:known chromosome:CEL140:I:9600130:9601225:-1 gene:K07A1.6 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000041870 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:9600124-9601126(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K07A1.6
Entrez Gene 172797 Entrez gene
SwissProt P90911 EMBL-EBI
WormBase CE18856 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03176 Hypothetical protein K07A1.6 [Caenorhabditis elegans] ref|NP_492546.1| K07A1.6 [Caenorhabditis elegans] 4.0E-51
blast CAE60167 Hypothetical protein CBG03721 [Caenorhabditis briggsae] 3.0E-27
Protein Domains
Database ID Description E-Value
Pfam IPR002919 EMBL-EBI Trypsin inhibitor-like, cysteine-rich TIL region 1.9E-21
Sequence
Target Sequence 
>C. ELEGANS:172227_X_AT
gcttattttactgcttgtttcattgctcatgctcattgctacattcatcgaagcgagaga
ttctgatattgataagaaatcccttagaactgaacgactaggtttttgtcctcgttacga
aacttggcgtaaatgtggaaacggatgtgaaaagagttgtactcatcctagacaaccacc
attttcccaatgcaaacttccatgcattccatattcatgtcgctgtaatcccggatttta
tcgtgataa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCTTATTTTACTGCTTGTTTCATTG 414 303 18 Antisense
TGCTTGTTTCATTGCTCATGCTCAT 455 579 29 Antisense
GCTCATGCTCATTGCTACATTCATC 174 301 42 Antisense
AGAAATCCCTTAGAACTGAACGACT 561 69 92 Antisense
CTGAACGACTAGGTTTTTGTCCTCG 627 219 107 Antisense
TTGTCCTCGTTACGAAACTTGGCGT 367 683 123 Antisense
TTGTACTCATCCTAGACAACCACCA 414 703 174 Antisense
AACCACCATTTTCCCAATGCAAACT 570 147 191 Antisense
AAACTTCCATGCATTCCATATTCAT 231 129 211 Antisense
CCATATTCATGTCGCTGTAATCCCG 492 269 226 Antisense
GTAATCCCGGATTTTATCGTGATAA 122 463 242 Antisense
Sequence Source Affymetrix Proprietary Database