[Home] | [Total List]

[172226_at]

Description B0391.7 /REP_DB=WormBase Gene ID /WP=CE17336 /TR=O62013 /GB=CAB03800.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 01      4grp_total > 11      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 238
1 2 3 4 range
A 45.9
(-1.2)
A 		56.5
(-0.7)
A 		5.4
(-3)
A 		140.1
(3)
A 		135
B 65.1
(1.8)
A 		76.3
(2.9)
A 		13.6
(-3)
A 		77.6
(3)
A 		64
C 22.3
(-2.8)
A 		15.2
(-3)
A 		40.5
(-2.3)
A 		243.6
(3)
A 		228
avr 44.4
(-1.9) 		49.3
(-1.7) 		19.8
(-3) 		153.8
(3) 		134

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 110
1 2 3 4 5 6 range
A 113.6
(3)
A 		4.2
(-3)
A 		71.1
(0.7)
A 		5.5
(-2.9)
A 		110
(2.8)
A 		40.6
(-1)
A 		109
B 8.6
(-2.8)
A 		102.9
(3)
A 		42.6
(-0.7)
A 		70.5
(1)
A 		41.2
(-0.8)
A 		5.1
(-3)
A 		98
C 9
(-2.9)
A 		113.8
(3)
A 		17.3
(-2.5)
A 		27.7
(-1.9)
A 		7.6
(-3)
A 		36.5
(-1.4)
A 		106
avr 43.7
(-0.9) 		73.6
(3) 		43.7
(-0.9) 		34.6
(-2.1) 		52.9
(0.3) 		27.4
(-3) 		46
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 40
1 2 3 4 range
A 16.7
(1.8)
A 		12.3
(0.4)
A 		1.4
(-3)
A 		20.5
(3)
A 		19
B 20.8
(3)
A 		18.8
(2.3)
A 		3.2
(-3)
A 		16.5
(1.5)
A 		18
C 7.4
(-2.5)
A 		4.4
(-3)
A 		14.1
(-1.4)
A 		41.1
(3)
A 		37
avr 15
(-0.3) 		11.8
(-1.3) 		6.2
(-3) 		26
(3) 		20

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 33
1 2 3 4 5 6 range
A 20.9
(0.7)
A 		1.5
(-3)
A 		15.5
(-0.3)
A 		1.4
(-3)
A 		33.2
(3)
A 		9.9
(-1.4)
A 		32
B 3
(-2.8)
A 		34.3
(3)
A 		10.3
(-1.4)
A 		18.7
(0.1)
A 		16.7
(-0.3)
A 		1.9
(-3)
A 		32
C 3.3
(-2.9)
A 		34.7
(3)
A 		4.4
(-2.6)
A 		5.6
(-2.4)
A 		2.5
(-3)
A 		12.2
(-1.2)
A 		32
avr 9.1
(-2.6) 		23.5
(3) 		10.1
(-2.2) 		8.6
(-2.8) 		17.5
(0.7) 		8
(-3) 		16
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 172226_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12627
Sequence Type Exemplar sequence
Representative Public ID B0391.7 NCBI
Target Description B0391.7 /REP_DB=WormBase Gene ID /WP=CE17336 /TR=O62013 /GB=CAB03800.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) B0391.7
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
B0391.7 B0391.7 /REP_DB=WormBase Gene ID /WP=CE17336 /TR=O62013 /GB=CAB03800.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000042634 2/11 Cross Hyb Matching Probes None
SNAP00000042616 2/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:15600687-15600875(-) 33.33 100.0
Sequence
Target Sequence 
>C. ELEGANS:172226_AT
ctttgcgctttctccaacacagcgcctcaaatagggagagaagagcgaaaaaagtggttt
tggcgcgggagcgcgtt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTTTGCGCTTTCTCCAACACAGCGC 532 223 41 Antisense
TTTGCGCTTTCTCCAACACAGCGCC 199 667 42 Antisense
CTCCAACACAGCGCCTCAAATAGGG 478 233 52 Antisense
TCCAACACAGCGCCTCAAATAGGGA 101 589 53 Antisense
CCAACACAGCGCCTCAAATAGGGAG 134 277 54 Antisense
AACACAGCGCCTCAAATAGGGAGAG 146 133 56 Antisense
CACAGCGCCTCAAATAGGGAGAGAA 296 195 58 Antisense
CAGCGCCTCAAATAGGGAGAGAAGA 66 203 60 Antisense
GGGAGAGAAGAGCGAAAAAAGTGGT 541 399 74 Antisense
AAGTGGTTTTGGCGCGGGAGCGCGT 11 153 92 Antisense
AGTGGTTTTGGCGCGGGAGCGCGTT 698 57 93 Antisense
Sequence Source Affymetrix Proprietary Database