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[172225_x_at]

Description W09C5.9 /REP_DB=WormBase Gene ID /WP=CE20172 /TR=Q9U328 /GB=CAB63335.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 55      4grp_total > 0      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 68
1 2 3 4 range
A 38.4
(1.1)
A 		18.1
(-2.9)
A 		17.6
(-3)
A 		48.3
(3)
A 		31
B 38.5
(-3)
A 		39.5
(-2.8)
A 		77.3
(3)
A 		61.6
(0.6)
A 		39
C 16.6
(-1.5)
A 		8.9
(-3)
A 		37.9
(2.5)
A 		40.6
(3)
A 		32
avr 31.2
(-1.1) 		22.2
(-3) 		44.3
(1.7) 		50.2
(3) 		28

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 51
1 2 3 4 5 6 range
A 15.3
(-2.5)
A 		47.3
(2.2)
A 		11.8
(-3)
A 		46.5
(2.1)
A 		16.5
(-2.3)
A 		52.9
(3)
M 		41
B 37.1
(-0.1)
A 		29
(-1.5)
A 		38.4
(0.1)
A 		55.8
(3)
A 		27.3
(-1.7)
A 		19.7
(-3)
A 		36
C 30.7
(1)
A 		19.8
(-0.7)
A 		43.8
(3)
A 		4.5
(-3)
A 		14.5
(-1.5)
A 		38.9
(2.3)
A 		39
avr 27.7
(-0.2) 		32
(1.2) 		31.3
(1) 		35.6
(2.5) 		19.4
(-3) 		37.2
(3) 		18
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 14
(3)
A 		3.9
(-3)
A 		4.6
(-2.6)
A 		7.1
(-1.1)
A 		10
B 12.3
(-1.1)
A 		9.7
(-3)
A 		17.9
(3)
A 		13.1
(-0.5)
A 		8
C 5.5
(-1.4)
A 		2.6
(-3)
A 		13.2
(3)
A 		6.8
(-0.6)
A 		11
avr 10.6
(1.8) 		5.4
(-3) 		11.9
(3) 		9
(0.3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 2.8
(-2.9)
A 		16.8
(3)
A 		2.6
(-3)
A 		11.8
(0.9)
A 		5
(-2)
A 		12.9
(1.4)
M 		14
B 12.9
(1.5)
A 		9.6
(-1.2)
A 		9.3
(-1.5)
A 		14.8
(3)
A 		11.1
(-0)
A 		7.4
(-3)
A 		7
C 11.4
(2.2)
A 		6
(-0.5)
A 		11.2
(2.1)
A 		0.9
(-3)
A 		4.7
(-1.1)
A 		13
(3)
A 		12
avr 9
(0) 		10.8
(2.6) 		7.7
(-1.9) 		9.2
(0.3) 		6.9
(-3) 		11.1
(3) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172225_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2220
Sequence Type Exemplar sequence
Representative Public ID W09C5.9 NCBI
Target Description W09C5.9 /REP_DB=WormBase Gene ID /WP=CE20172 /TR=Q9U328 /GB=CAB63335.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060994(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060994 NCBI Caenorhabditis elegans W09C5.9 (W09C5.9) mRNA, complete cds. 11/11 None
SNAP00000012970 ENSEMBL cdna:SNAP chromosome:CEL140:I:13666448:13669883:1 11/11 None
W09C5.9 ENSEMBL cdna:known chromosome:CEL140:I:13668720:13669883:1 gene:W09C5.9 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_001026500 1/11 Cross Hyb Matching Probes None
SNAP00000042885 1/11 Cross Hyb Matching Probes None
W09G3.7a 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:13669695-13669814(+) 84.4 84.4
Public Domain and Genome References
Gene Title
Ensembl W09C5.9
Entrez Gene 189314 Entrez gene
SwissProt Q9U328 EMBL-EBI
WormBase CE20172 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAD92382 Hypothetical protein W09G3.7a [Caenorhabditis elegans] emb|CAH60790.1| Hypothetical protein W09G3.7a [Caenorhabditis elegans] ref|NP_001021671.1| W09G3.7a [Caenorhabditis elegans] 6.0E-36
blast T26319 hypothetical protein W09G3.3 - Caenorhabditis elegans 6.0E-36
blast CAE68015 Hypothetical protein CBG13628 [Caenorhabditis briggsae] 2.0E-26
blast CAB63335 Hypothetical protein W09C5.9 [Caenorhabditis elegans] ref|NP_493395.1| W09C5.9 [Caenorhabditis elegans] 3.0E-19
Sequence
Target Sequence 
>C. ELEGANS:172225_X_AT
atggattatgttgtgggctctgaagaggggcaaattaatcgagcttctactcttgaaaat
atccgccccg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGGATTATGTTGTGGGCTCTGAAG 338 51 13 Antisense
GATTATGTTGTGGGCTCTGAAGAGG 704 429 16 Antisense
GTGGGCTCTGAAGAGGGGCAAATTA 605 485 25 Antisense
GAGGGGCAAATTAATCGAGCTTCTA 243 403 37 Antisense
GGGGCAAATTAATCGAGCTTCTACT 402 497 39 Antisense
GCAAATTAATCGAGCTTCTACTCTT 319 317 42 Antisense
AATTAATCGAGCTTCTACTCTTGAA 557 175 45 Antisense
TAATCGAGCTTCTACTCTTGAAAAT 595 635 48 Antisense
TCGAGCTTCTACTCTTGAAAATATC 255 603 51 Antisense
GCTTCTACTCTTGAAAATATCCGCC 655 305 55 Antisense
TCTACTCTTGAAAATATCCGCCCCG 697 611 58 Antisense
Sequence Source Affymetrix Proprietary Database