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[172222_at]

Description C03D6.2 /REP_DB=WormBase Gene ID /WP=CE05196 /TR=Q17601 /GB=CAA99767.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 17      4grp_total > 0      6grp_cgc > 06      6grp_cgc_sub > Cu      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 78
1 2 3 4 range
A 48.4
(-0.9)
A 		30.5
(-3)
A 		38.9
(-2)
A 		81.3
(3)
A 		51
B 31.2
(-0.1)
A 		3.4
(-3)
A 		61.8
(3)
A 		28.8
(-0.4)
A 		58
C 39
(-1.1)
A 		24.3
(-3)
A 		33.9
(-1.8)
A 		71.8
(3)
A 		48
avr 39.5
(-0.1) 		19.4
(-3) 		44.9
(0.7) 		60.6
(3) 		41

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 65
1 2 3 4 5 6 range
A 69.4
(3)
A 		9.8
(-2.5)
A 		4.9
(-3)
A 		8.4
(-2.7)
A 		37.1
(-0)
A 		15.1
(-2.1)
A 		65
B 32.7
(2.2)
A 		31.1
(1.9)
A 		34.2
(2.5)
A 		17.6
(-0.7)
A 		6.2
(-3)
A 		36.5
(3)
A 		30
C 38.1
(-0.4)
A 		62.4
(3)
A 		53.1
(1.7)
A 		23
(-2.5)
A 		19.2
(-3)
A 		28.9
(-1.7)
A 		43
avr 46.7
(3) 		34.4
(0.6) 		30.7
(-0.2) 		16.3
(-3) 		20.8
(-2.1) 		26.8
(-0.9) 		30
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 17.6
(3)
A 		6.6
(-3)
A 		10.2
(-1)
A 		11.9
(-0.1)
A 		11
B 9.9
(1)
A 		0.8
(-3)
A 		14.3
(3)
A 		6.1
(-0.6)
A 		14
C 12.9
(3)
A 		7
(-3)
A 		11.8
(1.9)
A 		12.1
(2.2)
A 		6
avr 13.5
(3) 		4.8
(-3) 		12.1
(2) 		10
(0.6) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 18
1 2 3 4 5 6 range
A 12.8
(3)
A 		3.5
(-1.8)
A 		1.1
(-3)
A 		2.1
(-2.5)
A 		11.2
(2.2)
A 		3.7
(-1.7)
A 		12
B 11.4
(1.8)
A 		10.4
(1.3)
A 		8.3
(0.1)
A 		4.7
(-1.8)
A 		2.5
(-3)
A 		13.6
(3)
A 		11
C 14.1
(1)
A 		19
(3)
A 		13.5
(0.7)
A 		4.6
(-3)
A 		6.2
(-2.3)
A 		9.7
(-0.9)
A 		14
avr 12.8
(3) 		11
(1.8) 		7.6
(-0.5) 		3.8
(-3) 		6.6
(-1.1) 		9
(0.5) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 172222_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1074
Sequence Type Exemplar sequence
Representative Public ID C03D6.2 NCBI
Target Description C03D6.2 /REP_DB=WormBase Gene ID /WP=CE05196 /TR=Q17601 /GB=CAA99767.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) C03D6.2
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
C03D6.2 C03D6.2 /REP_DB=WormBase Gene ID /WP=CE05196 /TR=Q17601 /GB=CAA99767.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_001025808 11/11 Negative Strand Matching Probes None
GENEFINDER00000028827 10/11 Negative Strand Matching Probes None
C03D6.3a 11/11 Negative Strand Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:9676366-9676495(-) 100.0 100.0
Sequence
Target Sequence 
>C. ELEGANS:172222_AT
gattatcagagtttttgtcttcttgcttccggttctccctcatggagttgttgttggtgt
atttgatgatggcgatgagctgctgcagctcttttca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATTATCAGAGTTTTTGTCTTCTTG 30 431 15 Antisense
TCAGAGTTTTTGTCTTCTTGCTTCC 386 623 20 Antisense
CCGGTTCTCCCTCATGGAGTTGTTG 478 259 43 Antisense
GGTTCTCCCTCATGGAGTTGTTGTT 345 507 45 Antisense
CTCCCTCATGGAGTTGTTGTTGGTG 132 235 49 Antisense
AGTTGTTGTTGGTGTATTTGATGAT 378 65 60 Antisense
GTTGGTGTATTTGATGATGGCGATG 240 437 67 Antisense
GATGATGGCGATGAGCTGCTGCAGC 405 409 79 Antisense
ATGATGGCGATGAGCTGCTGCAGCT 281 45 80 Antisense
GATGGCGATGAGCTGCTGCAGCTCT 567 405 82 Antisense
CGATGAGCTGCTGCAGCTCTTTTCA 555 247 87 Antisense
Sequence Source Affymetrix Proprietary Database