[Home] | [Total List]

[172220_x_at]

Description C37A5.4 /REP_DB=WormBase Gene ID /WP=CE17530 /TR=O62091 /GB=CAB07333.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 17      4grp_total > 30      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 400
1 2 3 4 range
A 385.8
(3)
P 		84.7
(-1.9)
A 		15.4
(-3)
A 		256.2
(0.9)
A 		370
B 383.4
(3)
P 		93.4
(-1.6)
A 		6.2
(-3)
A 		309.5
(1.8)
P 		377
C 406.2
(3)
P 		107.2
(-2.2)
A 		59.4
(-3)
A 		292.2
(1)
A 		347
avr 391.8
(3) 		95.1
(-1.9) 		27
(-3) 		286
(1.3) 		365

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 510
1 2 3 4 5 6 range
A 485.3
(3)
P 		269.9
(-0.2)
P 		201.5
(-1.2)
A 		183
(-1.5)
A 		80.2
(-3)
A 		258.7
(-0.4)
P 		405
B 363
(3)
P 		110.5
(-2)
A 		191.6
(-0.4)
A 		101.1
(-2.2)
A 		60.3
(-3)
A 		170.5
(-0.8)
P 		303
C 570.2
(3)
P 		156.4
(-2.3)
A 		170.1
(-2.1)
A 		130.1
(-2.6)
A 		99.9
(-3)
A 		182.3
(-1.9)
M 		470
avr 472.8
(3) 		178.9
(-1.5) 		187.7
(-1.4) 		138.1
(-2.1) 		80.1
(-3) 		203.8
(-1.1) 		393
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 139
1 2 3 4 range
A 140.5
(3)
P 		18.4
(-2.4)
A 		4
(-3)
A 		37.5
(-1.5)
A 		137
B 122.3
(3)
P 		23.1
(-1.9)
A 		1.4
(-3)
A 		65.9
(0.2)
P 		121
C 134.5
(3)
P 		30.8
(-2.5)
A 		20.7
(-3)
A 		49.3
(-1.5)
A 		114
avr 132.4
(3) 		24.1
(-2.3) 		8.7
(-3) 		50.9
(-1) 		124

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 187
1 2 3 4 5 6 range
A 89.5
(2.5)
P 		96
(3)
P 		43.9
(-1.4)
A 		46.4
(-1.1)
A 		24.2
(-3)
A 		63
(0.2)
P 		72
B 126.3
(3)
P 		36.8
(-2.3)
A 		46.5
(-1.7)
A 		26.8
(-2.9)
A 		24.5
(-3)
A 		63.6
(-0.7)
P 		102
C 211.3
(3)
P 		47.7
(-2.3)
A 		43.3
(-2.4)
A 		26.2
(-3)
A 		32.3
(-2.8)
A 		61
(-1.9)
M 		185
avr 142.4
(3) 		60.2
(-1.3) 		44.6
(-2.1) 		33.1
(-2.7) 		27
(-3) 		62.5
(-1.2) 		115
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172220_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.641
Sequence Type Exemplar sequence
Representative Public ID C37A5.4 NCBI
Target Description C37A5.4 /REP_DB=WormBase Gene ID /WP=CE17530 /TR=O62091 /GB=CAB07333.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061069(9), NM_061068(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061069 NCBI Caenorhabditis elegans C37A5.2 (C37A5.2) mRNA, complete cds. 9/11 A 
NM_061068 NCBI Caenorhabditis elegans C37A5.4 (C37A5.4) mRNA, complete cds. 11/11 A 
SNAP00000011857 ENSEMBL cdna:SNAP chromosome:CEL140:I:14161421:14162188:-1 11/11 None
GENEFINDER00000011870 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:14161421:14162188:-1 11/11 None
SNAP00000011859 ENSEMBL cdna:SNAP chromosome:CEL140:I:14163615:14164378:1 9/11 None
C37A5.4 ENSEMBL cdna:known chromosome:CEL140:I:14161421:14162286:-1 gene:C37A5.4 11/11 A 
C37A5.2 ENSEMBL cdna:known chromosome:CEL140:I:14163615:14164434:1 gene:C37A5.2 9/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000011868 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:14163545-14164309(+) 85.76 97.22
chrI:14161351-14162119(-) 88.54 100.0
Public Domain and Genome References
Gene Title

Ensembl C37A5.4
C37A5.2
Entrez Gene 173283 Entrez gene
259409 Entrez gene
SwissProt O62092 EMBL-EBI
O62091 EMBL-EBI
WormBase CE17529 Wormbase
CE17530 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB07333 Hypothetical protein C37A5.4 [Caenorhabditis elegans] ref|NP_493469.1| C37A5.4 [Caenorhabditis elegans] 8.0E-83
blast CAB07334 Hypothetical protein C37A5.2 [Caenorhabditis elegans] ref|NP_493470.1| C37A5.2 [Caenorhabditis elegans] 4.0E-82
blast CAB07333 Hypothetical protein C37A5.4 [Caenorhabditis elegans] ref|NP_493469.1| C37A5.4 [Caenorhabditis elegans] 7.0E-79
blast CAB07334 Hypothetical protein C37A5.2 [Caenorhabditis elegans] ref|NP_493470.1| C37A5.2 [Caenorhabditis elegans] 7.0E-79
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_493470.1 2 4-21,154-176
NP_493469.1 2 4-21,154-176
C37A5.4 2 4-21,154-176
C37A5.2 2 4-21,154-176
SNAP00000011857 2 4-21,154-176
GENEFINDER00000011870 2 4-21,154-176
SNAP00000011859 2 4-21,154-176
Sequence
Target Sequence 
>C. ELEGANS:172220_X_AT
gttcatttctgtattccttgttgcaatcctggcgatcggagcattctgtgcaacagaaac
cgagtccaagatgaagatgggaggatcgggatcggatgtgaagacggagatgaacatgaa
ttcccagacaccgcacacccttgaacgtcgctcggaaacccaatccagtatgaagatgga
tgggcaaggatccggtgtgaagactgaaatgaacatgaactcccagacaccgcaaatccg
tgatacccgttcggaaaccgagacaaagatgaagatggaaggacaaggatcagacatgaa
aactgaaataaaccagcaaatggatactccacacaccctcgaacgccgctcggaaaccga
atcacagattaagatggaaggacagggatccggtgtgaagactgaaatgaaccagcaaat
ggacgctgaagctccacacatccgtgaccgtcgctggggatactacgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTCATTTCTGTATTCCTTGTTGCA 240 445 18 Antisense
CCTTGTTGCAATCCTGGCGATCGGA 326 269 33 Antisense
GGCGATCGGAGCATTCTGTGCAACA 409 541 48 Antisense
TGAACATGAATTCCCAGACACCGCA 398 573 128 Antisense
TCGCTCGGAAACCCAATCCAGTATG 198 593 165 Antisense
AAATGAACATGAACTCCCAGACACC 635 117 224 Antisense
CAGACACCGCAAATCCGTGATACCC 534 203 241 Antisense
AGCAAATGGATACTCCACACACCCT 623 75 332 Antisense
GAACGCCGCTCGGAAACCGAATCAC 638 341 358 Antisense
AAATGGACGCTGAAGCTCCACACAT 422 121 434 Antisense
GTGACCGTCGCTGGGGATACTACGG 148 483 461 Antisense
Sequence Source Affymetrix Proprietary Database