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[172219_x_at]

Description F11A5.6 /REP_DB=WormBase Gene ID /WP=CE15784 /TR=O17790 /GB=CAB07358.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 36      4grp_total > 12      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 65
1 2 3 4 range
A 26.8
(3)
A 		19.4
(1.1)
A 		3.6
(-3)
A 		7.7
(-1.9)
A 		23
B 2.9
(-3)
A 		4.9
(1.6)
A 		5.5
(3)
A 		5.5
(3)
A 		3
C 2.5
(-3)
A 		5.2
(-2.7)
A 		2.4
(-3)
A 		66.9
(3)
A 		65
avr 10.7
(-1.2) 		9.8
(-1.4) 		3.8
(-3) 		26.7
(3) 		23

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 4.4
(-1.9)
A 		4.3
(-2)
A 		6.8
(0.6)
A 		4.9
(-1.4)
A 		3.4
(-3)
A 		9
(3)
A 		6
B 8.7
(3)
A 		5.7
(0.2)
A 		2.3
(-3)
A 		3.9
(-1.5)
A 		7.2
(1.6)
A 		6
(0.5)
A 		6
C 7.2
(-0.1)
A 		12
(3)
A 		7
(-0.2)
A 		4.4
(-1.9)
A 		2.6
(-3)
A 		3.3
(-2.6)
A 		9
avr 6.8
(2) 		7.3
(3) 		5.4
(-0.9) 		4.4
(-3) 		4.4
(-3) 		6.1
(0.5) 		3
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 9.7
(3)
A 		4.2
(-0.8)
A 		1
(-3)
A 		1.1
(-2.9)
A 		9
B 0.9
(-3)
A 		1.2
(1.5)
A 		1.3
(3)
A 		1.2
(1.5)
A 		0
C 0.8
(-3)
A 		1.5
(-2.6)
A 		0.8
(-3)
A 		11.3
(3)
A 		11
avr 3.8
(1.8) 		2.3
(-0.8) 		1
(-3) 		4.5
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3
1 2 3 4 5 6 range
A 0.8
(-3)
A 		1.5
(-0)
A 		1.5
(-0)
A 		1.2
(-1.3)
A 		1
(-2.1)
A 		2.2
(3)
A 		1
B 3
(3)
A 		1.9
(0.3)
A 		0.6
(-3)
A 		1
(-2)
A 		2.9
(2.8)
A 		2.2
(1)
A 		2
C 2.7
(1.1)
A 		3.6
(3)
A 		1.8
(-0.9)
A 		0.9
(-2.8)
A 		0.8
(-3)
A 		1.1
(-2.4)
A 		3
avr 2.2
(2.5) 		2.3
(3) 		1.3
(-1.6) 		1
(-3) 		1.6
(-0.2) 		1.8
(0.7) 		1
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172219_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14251
Sequence Type Exemplar sequence
Representative Public ID F11A5.6 NCBI
Target Description F11A5.6 /REP_DB=WormBase Gene ID /WP=CE15784 /TR=O17790 /GB=CAB07358.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074685(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074685 NCBI Caenorhabditis elegans F11A5.6 (F11A5.6) mRNA, complete cds. 11/11 None
F11A5.6 ENSEMBL cdna:known chromosome:CEL140:V:16206523:16206669:-1 gene:F11A5.6 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_076951 2/11 Cross Hyb Matching Probes A 
C18A11.6 2/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:19092207-19092348(+) 91.16 91.16
chrX:5404316-5404463(+) 94.56 94.56
chrX:5402233-5402380(+) 93.2 93.2
chrX:14137520-14137664(+) 91.16 91.16
chrI:1712344-1712491(+) 95.92 95.92
chrI:5455494-5455641(+) 93.88 93.88
chrII:416945-417092(-) 97.28 97.28
chrIII:1317086-1317233(-) 95.92 95.92
chrIII:7669223-7669627(-) 94.56 94.56
chrIII:536453-536694(-) 93.2 93.2
chrIV:3074334-3074481(-) 95.92 95.92
chrV:16206522-16206669(-) 100.0 100.0
chrV:17384140-17384284(-) 95.24 95.24
chrV:17386365-17386512(-) 95.92 95.92
chrX:1721580-1721727(-) 95.24 95.24
chrX:3204072-3204216(-) 93.88 93.88
chrX:8034609-8034756(-) 93.2 93.2
chrX:1936034-1936181(-) 93.2 93.2
chrI:11246887-11247031(-) 91.84 91.84
Public Domain and Genome References
Gene Title
Ensembl F11A5.6
Entrez Gene 184333 Entrez gene
SwissProt O17790 EMBL-EBI
WormBase CE15784 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB07358 Hypothetical protein F11A5.6 [Caenorhabditis elegans] ref|NP_507086.1| F11A5.6 [Caenorhabditis elegans] 7.0E-19
blast AAC69010 Hypothetical protein C18A11.6 [Caenorhabditis elegans] ref|NP_509352.1| C18A11.6 [Caenorhabditis elegans] 3.0E-13
Sequence
Target Sequence 
>C. ELEGANS:172219_X_AT
atgaaaaacggcgagcctctcggcgtcgaccggcttgcacccgttcttgcgggagaagtg
atgagaattcttggattcgcgtcgccgagtgcgcaaggcactgaaagtgcgtcaaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGAAAAACGGCGAGCCTCTCGGCG 505 41 13 Antisense
CTTGCACCCGTTCTTGCGGGAGAAG 18 219 46 Antisense
TGCACCCGTTCTTGCGGGAGAAGTG 103 577 48 Antisense
ACCCGTTCTTGCGGGAGAAGTGATG 515 89 51 Antisense
GATGAGAATTCTTGGATTCGCGTCG 201 411 72 Antisense
TGAGAATTCTTGGATTCGCGTCGCC 504 569 74 Antisense
GTCGCCGAGTGCGCAAGGCACTGAA 46 475 93 Antisense
TCGCCGAGTGCGCAAGGCACTGAAA 640 599 94 Antisense
GCCGAGTGCGCAAGGCACTGAAAGT 154 285 96 Antisense
GTGCGCAAGGCACTGAAAGTGCGTC 231 479 101 Antisense
GCAAGGCACTGAAAGTGCGTCAACA 136 321 105 Antisense
Sequence Source Affymetrix Proprietary Database