[Home] | [Total List]

[172217_x_at]

Description F13E9.2 /REP_DB=WormBase Gene ID /WP=CE05604 /TR=Q19409 /GB=CAA93407.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 41      4grp_total > 11      6grp_total_sub > Hat      6grp_rule_based > S3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 80
1 2 3 4 range
A 28.8
(-2.9)
A 		27.2
(-3)
A 		45.4
(-1.4)
A 		96.6
(3)
A 		69
B 34.8
(-2.3)
A 		65
(1.2)
P 		28.7
(-3)
A 		80.5
(3)
P 		52
C 71.6
(2.8)
P 		44.2
(-0.1)
P 		16.5
(-3)
A 		73.3
(3)
A 		57
avr 45.1
(-1.3) 		45.5
(-1.3) 		30.2
(-3) 		83.5
(3) 		53

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 54
1 2 3 4 5 6 range
A 57.9
(2.1)
A 		36.4
(-0.2)
A 		65.6
(3)
P 		41.7
(0.3)
P 		40.4
(0.2)
A 		11.6
(-3)
A 		54
B 45.8
(1)
P 		41.9
(0.4)
P 		58.6
(3)
P 		50
(1.7)
M 		25.2
(-2.2)
P 		20
(-3)
A 		39
C 18.3
(-3)
A 		50.8
(3)
P 		42.8
(1.5)
P 		49.3
(2.7)
A 		28.3
(-1.2)
A 		32.1
(-0.5)
A 		33
avr 40.7
(0.4) 		43
(0.8) 		55.7
(3) 		47
(1.5) 		31.3
(-1.2) 		21.2
(-3) 		35
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 10.5
(0.4)
A 		5.9
(-3)
A 		11.9
(1.4)
A 		14.1
(3)
A 		8
B 11.1
(-0.5)
A 		16
(2.3)
P 		6.7
(-3)
A 		17.2
(3)
P 		11
C 23.7
(3)
P 		12.7
(-0.7)
P 		5.8
(-3)
A 		12.4
(-0.8)
A 		18
avr 15.1
(3) 		11.5
(-0.1) 		8.1
(-3) 		14.6
(2.6) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 10.7
(1.1)
A 		12.9
(2.3)
A 		14.3
(3)
P 		10.6
(1.1)
P 		12.2
(1.9)
A 		2.8
(-3)
A 		12
B 15.9
(3)
P 		14
(1.7)
P 		14.2
(1.8)
P 		13.2
(1.1)
M 		10.3
(-1)
P 		7.4
(-3)
A 		9
C 6.8
(-3)
A 		15.5
(3)
P 		10.9
(-0.2)
P 		9.9
(-0.9)
A 		9.1
(-1.4)
A 		10.8
(-0.2)
A 		9
avr 11.1
(0.5) 		14.1
(3) 		13.1
(2.2) 		11.2
(0.5) 		10.5
(-0) 		7
(-3) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172217_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8623
Sequence Type Exemplar sequence
Representative Public ID F13E9.2 NCBI
Target Description F13E9.2 /REP_DB=WormBase Gene ID /WP=CE05604 /TR=Q19409 /GB=CAA93407.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069616(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069616 NCBI Caenorhabditis elegans F13E9.2 (F13E9.2) mRNA, complete cds. 11/11 None
SNAP00000017039 ENSEMBL cdna:SNAP chromosome:CEL140:IV:10877115:10877267:1 9/11 None
F13E9.2 ENSEMBL cdna:known chromosome:CEL140:IV:10877115:10877461:1 gene:F13E9.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:10877120-10877467(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F13E9.2
Entrez Gene 184420 Entrez gene
SwissProt Q19409 EMBL-EBI
WormBase CE05604 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA93407 Hypothetical protein F13E9.2 [Caenorhabditis elegans] ref|NP_502017.1| F13E9.2 [Caenorhabditis elegans] 1.0E-21
Sequence
Target Sequence 
>C. ELEGANS:172217_X_AT
tctctttccgtctttattgctttggttttctctttcaacgccgctgatgggcacagatgt
cacagaagaggaaacggtggtttttccaaaattttcgataaatcaacaattcagaaaatt
gttcctttctttctaatcaaaatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCTCTTTCCGTCTTTATTGCTTTGG 550 611 25 Antisense
GTCTTTATTGCTTTGGTTTTCTCTT 119 467 34 Antisense
TTGCTTTGGTTTTCTCTTTCAACGC 365 701 41 Antisense
TCTCTTTCAACGCCGCTGATGGGCA 545 611 53 Antisense
CTTTCAACGCCGCTGATGGGCACAG 312 223 56 Antisense
AACGCCGCTGATGGGCACAGATGTC 348 143 61 Antisense
CCGCTGATGGGCACAGATGTCACAG 570 261 65 Antisense
GATGGGCACAGATGTCACAGAAGAG 182 407 70 Antisense
CAGATGTCACAGAAGAGGAAACGGT 503 205 78 Antisense
TTCAGAAAATTGTTCCTTTCTTTCT 546 687 134 Antisense
TGTTCCTTTCTTTCTAATCAAAATT 102 561 144 Antisense
Sequence Source Affymetrix Proprietary Database