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[172216_x_at]

Description R160.2 /REP_DB=WormBase Gene ID /WP=CE19552 /TR=Q9TZD1 /GB=AAC68737.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 52      4grp_total > 02      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 21
1 2 3 4 range
A 1.2
(-3)
A 		1.7
(-2.9)
A 		1.4
(-2.9)
A 		22.2
(3)
A 		21
B 1.5
(-2.6)
A 		1.8
(-2)
A 		1.3
(-3)
A 		4.4
(3)
A 		3
C 2.9
(-1.9)
A 		2.2
(-2.5)
A 		1.5
(-3)
A 		9.4
(3)
A 		8
avr 1.9
(-2.7) 		1.9
(-2.7) 		1.4
(-3) 		12
(3) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 3.9
(1.5)
A 		1.2
(-3)
A 		3.9
(1.5)
A 		4.8
(3)
A 		1.6
(-2.3)
A 		3
(0)
A 		4
B 2
(-2.6)
A 		2.7
(-2.3)
A 		15.9
(3)
A 		3.2
(-2.1)
A 		6.9
(-0.6)
A 		1
(-3)
A 		15
C 1.2
(-2.6)
A 		1.1
(-2.7)
A 		3.2
(0.4)
A 		5
(3)
A 		1.4
(-2.3)
A 		0.9
(-3)
A 		4
avr 2.4
(-2.2) 		1.7
(-2.9) 		7.7
(3) 		4.3
(-0.3) 		3.3
(-1.3) 		1.6
(-3) 		6
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3
1 2 3 4 range
A 0.5
(-2.8)
A 		0.4
(-3)
A 		0.4
(-3)
A 		3.3
(3)
A 		3
B 0.5
(-1)
A 		0.5
(-1)
A 		0.3
(-3)
A 		0.9
(3)
A 		1
C 1
(-0.3)
A 		0.6
(-2.5)
A 		0.5
(-3)
A 		1.6
(3)
A 		1
avr 0.7
(-1.8) 		0.5
(-2.6) 		0.4
(-3) 		1.9
(3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 4
1 2 3 4 5 6 range
A 0.7
(-0.8)
A 		0.4
(-3)
A 		0.8
(0)
A 		1.2
(3)
A 		0.5
(-2.3)
A 		0.7
(-0.8)
A 		1
B 0.7
(-2.5)
A 		0.9
(-2.1)
A 		3.9
(3)
A 		0.8
(-2.3)
A 		2.8
(1.1)
A 		0.4
(-3)
A 		4
C 0.4
(-2.1)
A 		0.3
(-3)
A 		0.8
(1.3)
A 		1
(3)
A 		0.5
(-1.3)
A 		0.3
(-3)
A 		1
avr 0.6
(-2.5) 		0.5
(-3) 		1.8
(3) 		1
(-0.7) 		1.3
(0.7) 		0.5
(-3) 		1
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172216_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16816
Sequence Type Exemplar sequence
Representative Public ID R160.2 NCBI
Target Description R160.2 /REP_DB=WormBase Gene ID /WP=CE19552 /TR=Q9TZD1 /GB=AAC68737.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076354(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076354 NCBI Caenorhabditis elegans R160.2 (R160.2) mRNA, complete cds. 11/11 None
R160.2 ENSEMBL cdna:known chromosome:CEL140:X:4376568:4376823:1 gene:R160.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000044077 10/11 Negative Strand Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:4376568-4376824(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl R160.2
Entrez Gene 187911 Entrez gene
SwissProt Q9TZD1 EMBL-EBI
WormBase CE19552 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC68737 Hypothetical protein R160.2 [Caenorhabditis elegans] ref|NP_508755.1| R160.2 [Caenorhabditis elegans] 7.0E-24
Sequence
Target Sequence 
>C. ELEGANS:172216_X_AT
aaaatgcaatctactcctggtttcgctgacgtggacgatatgcaactcgtcggtatcttc
tcacgtcgtcaacttcttgaacggcattttcgtgttcaattggatcgtttctttgttgat
cataagcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAAATGCAATCTACTCCTGGTTTCG 112 133 16 Antisense
CTGGTTTCGCTGACGTGGACGATAT 424 241 32 Antisense
GCTGACGTGGACGATATGCAACTCG 566 295 40 Antisense
TATGCAACTCGTCGGTATCTTCTCA 311 657 54 Antisense
CTTCTCACGTCGTCAACTTCTTGAA 258 221 72 Antisense
GTCGTCAACTTCTTGAACGGCATTT 7 473 80 Antisense
GTCAACTTCTTGAACGGCATTTTCG 168 465 83 Antisense
ACTTCTTGAACGGCATTTTCGTGTT 280 103 87 Antisense
AACGGCATTTTCGTGTTCAATTGGA 392 143 95 Antisense
GTGTTCAATTGGATCGTTTCTTTGT 628 485 107 Antisense
ATCGTTTCTTTGTTGATCATAAGCC 567 35 119 Antisense
Sequence Source Affymetrix Proprietary Database