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[172215_x_at]

Description Y7A5A.5 /REP_DB=WormBase Gene ID /WP=CE21330 /TR=Q9XVY9 /GB=CAA22465.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 52      4grp_total > 10      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 105
1 2 3 4 range
A 40.7
(-1.1)
A 		22.7
(-2.2)
A 		9.5
(-3)
A 		110.4
(3)
A 		101
B 28.4
(-3)
A 		30.1
(-2.7)
A 		62.8
(3)
A 		61.5
(2.8)
A 		34
C 5.3
(-3)
A 		48
(2.7)
A 		15.3
(-1.7)
A 		50.4
(3)
A 		45
avr 24.8
(-3) 		33.6
(-1.9) 		29.2
(-2.5) 		74.1
(3) 		49

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 57
1 2 3 4 5 6 range
A 42.9
(-1.1)
A 		33.8
(-3)
A 		62.1
(3)
A 		38.9
(-1.9)
A 		34.1
(-2.9)
A 		54.2
(1.3)
A 		28
B 21.7
(-0.5)
A 		44.6
(2.9)
A 		26.6
(0.2)
A 		45.2
(3)
A 		21.4
(-0.6)
A 		5
(-3)
A 		40
C 11
(-2.4)
A 		20.9
(-0.2)
A 		35.2
(3)
A 		13.9
(-1.7)
A 		25.1
(0.8)
A 		8.1
(-3)
A 		27
avr 25.2
(-2.1) 		33.1
(0.4) 		41.3
(3) 		32.7
(0.3) 		26.9
(-1.6) 		22.4
(-3) 		19
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 14.8
(2.4)
A 		4.9
(-1.9)
A 		2.5
(-3)
A 		16.2
(3)
A 		14
B 9.1
(-1.6)
A 		7.4
(-3)
A 		14.6
(3)
A 		13.1
(1.8)
A 		7
C 1.8
(-3)
A 		13.8
(3)
A 		5.3
(-1.3)
A 		8.5
(0.4)
A 		12
avr 8.6
(-1.7) 		8.7
(-1.6) 		7.5
(-3) 		12.6
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 7.9
(-3)
A 		12
(1.4)
A 		13.5
(3)
A 		9.9
(-0.9)
A 		10.3
(-0.4)
A 		13.2
(2.7)
A 		6
B 7.6
(-0.3)
A 		14.9
(3)
A 		6.5
(-0.8)
A 		12
(1.7)
A 		8.7
(0.2)
A 		1.8
(-3)
A 		13
C 4.1
(-1.7)
A 		6.4
(0.5)
A 		9
(3)
A 		2.8
(-2.9)
A 		8.1
(2.1)
A 		2.7
(-3)
A 		6
avr 6.5
(-2.3) 		11.1
(3) 		9.7
(1.4) 		8.2
(-0.3) 		9
(0.6) 		5.9
(-3) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172215_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17734
Sequence Type Exemplar sequence
Representative Public ID Y7A5A.5 NCBI
Target Description Y7A5A.5 /REP_DB=WormBase Gene ID /WP=CE21330 /TR=Q9XVY9 /GB=CAA22465.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078197(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078197 NCBI Caenorhabditis elegans Y7A5A.5 (Y7A5A.5) mRNA, complete cds. 11/11 None
Y7A5A.5 ENSEMBL cdna:known chromosome:CEL140:X:15786447:15786744:-1 gene:Y7A5A.5 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000028090 4/11 Cross Hyb Matching Probes None
SNAP00000028080 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:15786446-15786744(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y7A5A.5
Entrez Gene 189384 Entrez gene
SwissProt Q9XVY9 EMBL-EBI
WormBase CE21330 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA22465 Hypothetical protein Y7A5A.5 [Caenorhabditis elegans] ref|NP_510598.1| Y7A5A.5 [Caenorhabditis elegans] 7.0E-26
Sequence
Target Sequence 
>C. ELEGANS:172215_X_AT
ggaacgggacatggcaaaatatggtttgatgctgataggaggagatgctgcaaaaactcg
tctactatttttgacagtcgatgccacaggtgatccaaaaattctgaaccacgacacccg
ccagtcaaagtggactact

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAACGGGACATGGCAAAATATGGT 88 529 15 Antisense
AAATATGGTTTGATGCTGATAGGAG 173 115 31 Antisense
TGATGCTGATAGGAGGAGATGCTGC 565 565 41 Antisense
GATGCTGCAAAAACTCGTCTACTAT 271 413 58 Antisense
AACTCGTCTACTATTTTTGACAGTC 515 141 69 Antisense
TTTTTGACAGTCGATGCCACAGGTG 139 669 82 Antisense
GACAGTCGATGCCACAGGTGATCCA 484 369 87 Antisense
ATGCCACAGGTGATCCAAAAATTCT 234 41 95 Antisense
CAAAAATTCTGAACCACGACACCCG 442 191 110 Antisense
GACACCCGCCAGTCAAAGTGGACTA 13 349 127 Antisense
CACCCGCCAGTCAAAGTGGACTACT 312 199 129 Antisense
Sequence Source Affymetrix Proprietary Database