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[172213_x_at]

Description C27C7.1 /REP_DB=WormBase Gene ID /WP=CE19705 /TR=Q9XVC6 /GB=CAB03931.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 89      6grp_high1_10_10 > 99      4grp_highest_8_8 > 12      4grp_high_8_8 > 39      6grp_highest_nonorm > 95      6grp_total > 99      4grp_total > 32      6grp_highest_sub > In      6grp_total_sub > Increase      6grp_rule_based > S5      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 380
1 2 3 4 range
A 158.3
(-3)
P 		299
(-0.5)
P 		501.9
(3)
P 		376.9
(0.8)
P 		344
B 129.5
(-3)
P 		281.6
(0.7)
P 		378.1
(3)
P 		353.7
(2.4)
P 		249
C 122
(-3)
P 		289.7
(0.2)
P 		420.5
(2.8)
P 		432.4
(3)
P 		310
avr 136.6
(-3) 		290.1
(0.1) 		433.5
(3) 		387.7
(2.1) 		297

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1483
1 2 3 4 5 6 range
A 166.3
(-2.9)
P 		153.6
(-3)
P 		153.6
(-3)
P 		455.2
(-1.7)
P 		1414.4
(2.4)
P 		1549.8
(3)
P 		1396
B 128
(-3)
P 		154.5
(-2.9)
P 		189
(-2.7)
P 		469.1
(-1.4)
P 		1383.2
(2.8)
P 		1422.7
(3)
P 		1295
C 162.2
(-2.9)
P 		146.1
(-3)
P 		244
(-2.6)
P 		365.1
(-2.1)
P 		1611.2
(3)
P 		1114
(1)
P 		1465
avr 152.2
(-3) 		151.4
(-3) 		195.5
(-2.8) 		429.8
(-1.7) 		1469.6
(3) 		1362.2
(2.5) 		1318
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 106
1 2 3 4 range
A 57.6
(-2.8)
P 		64.9
(-2.2)
P 		131.2
(3)
P 		55.2
(-3)
P 		76
B 41.3
(-3)
P 		69.5
(0.7)
P 		87.6
(3)
P 		75.4
(1.4)
P 		46
C 40.4
(-3)
P 		83.3
(-0.6)
P 		146.6
(3)
P 		72.9
(-1.2)
P 		106
avr 46.4
(-3) 		72.6
(-0.9) 		121.8
(3) 		67.8
(-1.3) 		75

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 531
1 2 3 4 5 6 range
A 30.7
(-3)
P 		54.6
(-2.6)
P 		33.4
(-3)
P 		115.5
(-1.7)
P 		426.8
(3)
P 		377.3
(2.3)
P 		396
B 44.5
(-3)
P 		51.4
(-2.9)
P 		45.9
(-3)
P 		124.2
(-2.1)
P 		562
(3)
P 		530.5
(2.6)
P 		518
C 60.1
(-2.8)
P 		44.6
(-3)
P 		62.1
(-2.8)
P 		73.4
(-2.6)
P 		521.4
(3)
P 		372.9
(1.1)
P 		477
avr 45.1
(-3) 		50.2
(-2.9) 		47.1
(-3) 		104.4
(-2.2) 		503.4
(3) 		426.9
(2) 		458
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172213_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.860
Sequence Type Exemplar sequence
Representative Public ID C27C7.1 NCBI
Target Description C27C7.1 /REP_DB=WormBase Gene ID /WP=CE19705 /TR=Q9XVC6 /GB=CAB03931.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060522(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060522 NCBI Caenorhabditis elegans C27C7.1 (C27C7.1) mRNA, complete cds. 11/11 None
GENEFINDER00000039065 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:11447433:11448564:1 10/11 None
C27C7.1 ENSEMBL cdna:known chromosome:CEL140:I:11447410:11448797:1 gene:C27C7.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_066830 6/11 Cross Hyb Matching Probes A 
NM_078460 7/11 Cross Hyb Matching Probes A 
SNAP00000039064 7/11 Cross Hyb Matching Probes None
SNAP00000010163 6/11 Cross Hyb Matching Probes None
GENEFINDER00000010174 6/11 Cross Hyb Matching Probes None
GENEFINDER00000021875 7/11 Cross Hyb Matching Probes None
SNAP00000021874 7/11 Cross Hyb Matching Probes None
T16G12.3 6/11 Cross Hyb Matching Probes A 
H11L12.1 7/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Public Domain and Genome References
Gene Title
Ensembl C27C7.1
Entrez Gene 173029 Entrez gene
SwissProt Q9XVC6 EMBL-EBI
WormBase CE19705 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03931 Hypothetical protein C27C7.1 [Caenorhabditis elegans] ref|NP_492923.1| C27C7.1 [Caenorhabditis elegans] 1.0E-141
blast CAB03931 Hypothetical protein C27C7.1 [Caenorhabditis elegans] ref|NP_492923.1| C27C7.1 [Caenorhabditis elegans] 1.0E-112
blast AAC78197 Hypothetical protein H11L12.1 [Caenorhabditis elegans] ref|NP_510861.1| H11L12.1 [Caenorhabditis elegans] 3.0E-98
blast AAC78197 Hypothetical protein H11L12.1 [Caenorhabditis elegans] ref|NP_510861.1| H11L12.1 [Caenorhabditis elegans] 2.0E-92
blast CAA82972 Hypothetical protein T16G12.3 [Caenorhabditis elegans] ref|NP_499231.2| T16G12.3 [Caenorhabditis elegans] 1.0E-89
blast CAA82972 Hypothetical protein T16G12.3 [Caenorhabditis elegans] ref|NP_499231.2| T16G12.3 [Caenorhabditis elegans] 6.0E-84
Sequence
Target Sequence 
>C. ELEGANS:172213_X_AT
ataaggatcttcacgagcgccatgtccatccttcacaaggatatcaacgtcatggatcca
aggctccagctcatggccacccttcaagccaaggagcacgaaggtcccaactcaagttgt
caaacttcccgaaacttctggccaaccttatgcaggatacaaaagccacgcaagatttta
attcaaaataccacagcgatttcaaaaaatcaaaaaattcgctgatcacaggggaatcta
tcttcaaattttcccatggaataattaatttcttcttcgggaggacatctgccagttgtg
catccaatcaggacacgctacaaccgactgcttccactatgtcggacggagagcccgaag
aggacaaggtgaagctctgtggaaaccgcctggaagtcggagtcaccgacaatctggccg
gcactcagcgccgcaaggaacaacaacagctgcaaggcgctcaagccaagaagcagcagg
ccccacagcgcgttgtcaaccgcaaggccaaccatcaaaaattatccaggaagcgtcgct
atgctccgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATAAGGATCTTCACGAGCGCCATGT 437 23 230 Antisense
ACGTCATGGATCCAAGGCTCCAGCT 246 95 276 Antisense
TGGCCACCCTTCAAGCCAAGGAGCA 601 541 303 Antisense
AGCACGAAGGTCCCAACTCAAGTTG 440 45 324 Antisense
GTTGTCAAACTTCCCGAAACTTCTG 603 435 345 Antisense
GAAACTTCTGGCCAACCTTATGCAG 63 357 360 Antisense
GAGGACATCTGCCAGTTGTGCATCC 307 405 510 Antisense
CAATCAGGACACGCTACAACCGACT 380 181 534 Antisense
CGACTGCTTCCACTATGTCGGACGG 645 251 554 Antisense
ACCGCCTGGAAGTCGGAGTCACCGA 514 85 614 Antisense
TCCAGGAAGCGTCGCTATGCTCCGT 145 589 754 Antisense
Sequence Source Affymetrix Proprietary Database