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[172212_x_at]

Description D1054.6 /REP_DB=WormBase Gene ID /WP=CE05524 /TR=Q18950 /GB=CAA98443.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 93      4grp_total > 09      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 32
1 2 3 4 range
A 1
(-3)
A 		4.8
(-2.3)
A 		2
(-2.8)
A 		33.2
(3)
A 		32
B 1
(-3)
A 		1.1
(-2.8)
A 		3.8
(1.4)
A 		4.8
(3)
A 		4
C 2.9
(-1.7)
A 		1.4
(-3)
A 		1.9
(-2.6)
A 		8.3
(3)
A 		7
avr 1.6
(-3) 		2.4
(-2.7) 		2.6
(-2.6) 		15.4
(3) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 2.1
(-2.9)
A 		7.3
(-0.7)
A 		2.7
(-2.7)
A 		5.9
(-1.3)
A 		16.2
(3)
A 		1.9
(-3)
A 		14
B 1.7
(-2.9)
A 		3.5
(-2.2)
A 		3.6
(-2.2)
A 		1.5
(-3)
A 		17.3
(3)
A 		1.8
(-2.9)
A 		16
C 1.3
(-1.6)
A 		1
(-3)
A 		1.6
(-0.2)
A 		2.2
(2.5)
A 		2.3
(3)
A 		1.4
(-1.2)
A 		1
avr 1.7
(-3) 		3.9
(-1.7) 		2.6
(-2.5) 		3.2
(-2.1) 		11.9
(3) 		1.7
(-3) 		10
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 5
1 2 3 4 range
A 0.4
(-3)
A 		1
(-2.2)
A 		0.5
(-2.9)
A 		4.9
(3)
A 		5
B 0.3
(-3)
A 		0.3
(-3)
A 		0.9
(2.1)
A 		1
(3)
A 		1
C 1
(0.6)
A 		0.4
(-3)
A 		0.7
(-1.2)
A 		1.4
(3)
A 		1
avr 0.6
(-3) 		0.6
(-3) 		0.7
(-2.7) 		2.4
(3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 7
1 2 3 4 5 6 range
A 0.4
(-3)
A 		2.6
(-0.1)
A 		0.6
(-2.7)
A 		1.5
(-1.5)
A 		4.9
(3)
A 		0.5
(-2.9)
A 		5
B 0.6
(-2.8)
A 		1.2
(-2.3)
A 		0.9
(-2.5)
A 		0.4
(-3)
A 		7
(3)
A 		0.7
(-2.7)
A 		7
C 0.5
(0)
A 		0.3
(-3)
A 		0.4
(-1.5)
A 		0.4
(-1.5)
A 		0.7
(3)
A 		0.5
(0)
A 		0
avr 0.5
(-3) 		1.4
(-1.5) 		0.6
(-2.8) 		0.8
(-2.5) 		4.2
(3) 		0.6
(-2.8) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172212_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14286
Sequence Type Exemplar sequence
Representative Public ID D1054.6 NCBI
Target Description D1054.6 /REP_DB=WormBase Gene ID /WP=CE05524 /TR=Q18950 /GB=CAA98443.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
D1054.6 ENSEMBL cdna:pseudogene chromosome:CEL140:V:10781061:10782605:-1 gene:D1054.6 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000017219 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:10782072-10782605(-) 100.0 100.0
Public Domain and Genome References
Ensembl D1054.6
Sequence
Target Sequence 
>C. ELEGANS:172212_X_AT
tccttattcctgttgccaattcatgtatacctactcagcaagtggaaacaacaactacga
cgacaacgtccacaaccacaacaactcctattccatgtccaactggctgggaacaattcg
agaggcctagtggaacatggtgtatccagatatttataattgctggaagccgtgcggaag
cagaaagcgcttgtgctgcacaggg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCCTTATTCCTGTTGCCAATTCATG 143 593 26 Antisense
GCCAATTCATGTATACCTACTCAGC 608 277 40 Antisense
GGAAACAACAACTACGACGACAACG 579 527 69 Antisense
ACTACGACGACAACGTCCACAACCA 346 101 79 Antisense
AACCACAACAACTCCTATTCCATGT 206 147 99 Antisense
TCCATGTCCAACTGGCTGGGAACAA 431 589 117 Antisense
GGAACAATTCGAGAGGCCTAGTGGA 290 527 135 Antisense
GGAACATGGTGTATCCAGATATTTA 395 529 157 Antisense
TAATTGCTGGAAGCCGTGCGGAAGC 111 635 182 Antisense
GAAGCCGTGCGGAAGCAGAAAGCGC 667 343 191 Antisense
CAGAAAGCGCTTGTGCTGCACAGGG 399 203 206 Antisense
Sequence Source Affymetrix Proprietary Database