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[172210_x_at]

Description T01C1.1 /REP_DB=WormBase Gene ID /WP=CE12906 /TR=Q22050 /GB=CAA92008.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 20      4grp_total > 04      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 237
1 2 3 4 range
A 47.1
(-2.7)
A 		40.5
(-3)
A 		48.2
(-2.7)
A 		182.7
(3)
P 		142
B 48.5
(0.2)
A 		31.9
(-1.9)
A 		23.1
(-3)
A 		71.4
(3)
A 		48
C 51.4
(-1.7)
A 		1.2
(-3)
A 		13.3
(-2.7)
A 		237.7
(3)
P 		237
avr 49
(-1.9) 		24.5
(-3) 		28.2
(-2.8) 		163.9
(3) 		139

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 100
1 2 3 4 5 6 range
A 15.5
(-2.5)
A 		30.6
(-1.6)
A 		101.9
(3)
P 		11.2
(-2.8)
A 		15.4
(-2.5)
A 		8.3
(-3)
A 		94
B 4.9
(-3)
A 		20.9
(-1.1)
A 		18.8
(-1.3)
A 		18
(-1.4)
A 		54.8
(3)
A 		4.7
(-3)
A 		50
C 20.4
(-1.3)
A 		67.5
(3)
A 		20.7
(-1.3)
A 		26.7
(-0.7)
A 		1.9
(-3)
A 		15.9
(-1.7)
A 		66
avr 13.6
(-2.4) 		39.7
(1.8) 		47.1
(3) 		18.6
(-1.6) 		24
(-0.7) 		9.6
(-3) 		38
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 40
1 2 3 4 range
A 17.2
(-0.2)
A 		8.8
(-3)
A 		12.6
(-1.7)
A 		26.7
(3)
P 		18
B 15.5
(3)
A 		7.9
(-1.5)
A 		5.4
(-3)
A 		15.2
(2.8)
A 		10
C 17
(-0.5)
A 		0.4
(-3)
A 		4.6
(-2.4)
A 		40.1
(3)
P 		40
avr 16.6
(0) 		5.7
(-3) 		7.5
(-2.5) 		27.3
(3) 		22

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 22
1 2 3 4 5 6 range
A 2.9
(-2.7)
A 		10.9
(-0.4)
A 		22.2
(3)
P 		2.8
(-2.8)
A 		4.6
(-2.2)
A 		2
(-3)
A 		20
B 1.7
(-3)
A 		7
(-1.5)
A 		4.6
(-2.2)
A 		4.8
(-2.1)
A 		22.3
(3)
A 		1.7
(-3)
A 		21
C 7.6
(-0.9)
A 		20.6
(3)
A 		5.3
(-1.6)
A 		5.4
(-1.6)
A 		0.6
(-3)
A 		5.3
(-1.6)
A 		20
avr 4.1
(-2.3) 		12.8
(3) 		10.7
(1.7) 		4.3
(-2.2) 		9.2
(0.8) 		3
(-3) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172210_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16147
Sequence Type Exemplar sequence
Representative Public ID T01C1.1 NCBI
Target Description T01C1.1 /REP_DB=WormBase Gene ID /WP=CE12906 /TR=Q22050 /GB=CAA92008.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) T01C1.1
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
T01C1.1 T01C1.1 /REP_DB=WormBase Gene ID /WP=CE12906 /TR=Q22050 /GB=CAA92008.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_066037 3/11 Cross Hyb Matching Probes A 
NM_075845 4/11 Cross Hyb Matching Probes A 
K03F8.1 3/11 Cross Hyb Matching Probes A 
Y45F3A.7 3/11 Cross Hyb Matching Probes A 
T02E9.4 5/11 Cross Hyb Matching Probes None
K08G2.4 2/11 Cross Hyb Matching Probes None
F21E9.1 4/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Sequence
Target Sequence 
>C. ELEGANS:172210_X_AT
tccactccaccagacacgatagaattgaagctcaattgaaactaatgtataaacctctca
gacaatttgttactttctctagttcaaataggcacccaatgattttagttaggaaggaca
aatgctccacgcatttctttgctcatatcatcccagtctggaacaatttgttcaaaaatg
ttacggtttttatatccccatatcagttctgtgaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCCACTCCACCAGACACGATAGAAT 31 589 23 Antisense
GAAACTAATGTATAAACCTCTCAGA 402 355 60 Antisense
TAAACCTCTCAGACAATTTGTTACT 252 641 72 Antisense
GACAATTTGTTACTTTCTCTAGTTC 368 353 83 Antisense
TTCTCTAGTTCAAATAGGCACCCAA 356 691 97 Antisense
TAGGCACCCAATGATTTTAGTTAGG 549 653 111 Antisense
TAGGAAGGACAAATGCTCCACGCAT 573 653 132 Antisense
TCCACGCATTTCTTTGCTCATATCA 228 589 148 Antisense
GCTCATATCATCCCAGTCTGGAACA 200 301 163 Antisense
TGTTACGGTTTTTATATCCCCATAT 76 559 201 Antisense
TATATCCCCATATCAGTTCTGTGAA 143 661 213 Antisense
Sequence Source Affymetrix Proprietary Database