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[172207_x_at]

Description T06E4.9 /REP_DB=WormBase Gene ID /WP=CE23952 /TR=Q22263 /GB=CAA94795.2 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 79      6grp_high1_10_10 > 97      6grp_highest_nonorm > 91      6grp_total > 89      4grp_total > 49      6grp_highest_sub > In      6grp_high1_sub > In      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 745
1 2 3 4 range
A 52.7
(-2.8)
P 		745.2
(2.8)
P 		770.6
(3)
P 		25.9
(-3)
A 		745
B 78.9
(-2.8)
P 		574.9
(2.4)
P 		634.1
(3)
P 		54.9
(-3)
A 		579
C 70.5
(-2.7)
P 		654.7
(3)
P 		636.3
(2.8)
P 		43
(-3)
A 		612
avr 67.4
(-2.8) 		658.3
(2.8) 		680.3
(3) 		41.3
(-3) 		639

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 302
1 2 3 4 5 6 range
A 120.2
(-3)
P 		247.1
(-0.3)
P 		138.5
(-2.6)
P 		244.6
(-0.4)
P 		311.3
(1)
P 		406.9
(3)
P 		287
B 104.7
(-3)
P 		211.9
(-0.5)
P 		248.8
(0.3)
P 		198.8
(-0.8)
P 		326.3
(2.1)
P 		365.9
(3)
P 		261
C 143.1
(-3)
P 		319.3
(2.7)
P 		163.5
(-2.3)
P 		189.4
(-1.5)
P 		329.7
(3)
P 		326.6
(2.9)
P 		187
avr 122.7
(-3) 		259.4
(0.4) 		183.6
(-1.5) 		210.9
(-0.8) 		322.4
(1.9) 		366.5
(3) 		244
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 218
1 2 3 4 range
A 19.2
(-2.5)
P 		161.8
(1.8)
P 		201.4
(3)
P 		3.8
(-3)
A 		198
B 25.2
(-2.4)
P 		142
(2.8)
P 		146.9
(3)
P 		11.7
(-3)
A 		135
C 23.3
(-2.6)
P 		188.2
(2.1)
P 		221.8
(3)
P 		7.3
(-3)
A 		215
avr 22.6
(-2.5) 		164
(2.1) 		190
(3) 		7.6
(-3) 		182

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 114
1 2 3 4 5 6 range
A 22.2
(-3)
P 		87.9
(2.1)
P 		30.2
(-2.4)
P 		62
(0.1)
P 		94
(2.6)
P 		99.1
(3)
P 		77
B 36.4
(-3)
P 		70.5
(-1)
P 		60.4
(-1.6)
P 		52.7
(-2)
P 		132.6
(2.8)
P 		136.5
(3)
P 		100
C 53
(-1.7)
P 		97.4
(2)
P 		41.6
(-2.7)
P 		38.1
(-3)
P 		106.7
(2.8)
P 		109.3
(3)
P 		71
avr 37.2
(-3) 		85.3
(0.7) 		44.1
(-2.5) 		50.9
(-1.9) 		111.1
(2.7) 		115
(3) 		78
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172207_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12415
Sequence Type Exemplar sequence
Representative Public ID T06E4.9 NCBI
Target Description T06E4.9 /REP_DB=WormBase Gene ID /WP=CE23952 /TR=Q22263 /GB=CAA94795.2 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073080(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073080 NCBI Caenorhabditis elegans T06E4.9 (T06E4.9) mRNA, complete cds. 11/11 None
SNAP00000007436 ENSEMBL cdna:SNAP chromosome:CEL140:V:9622093:9623430:1 11/11 None
GENEFINDER00000007455 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:9622729:9623420:1 11/11 None
T06E4.9 ENSEMBL cdna:known chromosome:CEL140:V:9622729:9623539:1 gene:T06E4.9 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_073081 4/11 Cross Hyb Matching Probes A 
SNAP00000007437 4/11 Cross Hyb Matching Probes None
GENEFINDER00000007454 4/11 Cross Hyb Matching Probes None
T06E4.8 4/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:9622728-9623476(+) 100.0 100.0
chrV:9624807-9625491(-) 85.76 85.76
Public Domain and Genome References
Gene Title
Ensembl T06E4.9
Entrez Gene 179348 Entrez gene
SwissProt Q22263 EMBL-EBI
WormBase CE23952 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA94795 Hypothetical protein T06E4.9 [Caenorhabditis elegans] ref|NP_505481.1| T06E4.9 [Caenorhabditis elegans] 3.0E-34
blast CAA94795 Hypothetical protein T06E4.9 [Caenorhabditis elegans] ref|NP_505481.1| T06E4.9 [Caenorhabditis elegans] 8.0E-34
blast CAA94795 Hypothetical protein T06E4.9 [Caenorhabditis elegans] ref|NP_505481.1| T06E4.9 [Caenorhabditis elegans] 2.0E-33
blast CAA94794 Hypothetical protein T06E4.8 [Caenorhabditis elegans] ref|NP_505482.1| T06E4.8 [Caenorhabditis elegans] 9.0E-20
blast CAA94794 Hypothetical protein T06E4.8 [Caenorhabditis elegans] ref|NP_505482.1| T06E4.8 [Caenorhabditis elegans] 3.0E-19
blast CAA94794 Hypothetical protein T06E4.8 [Caenorhabditis elegans] ref|NP_505482.1| T06E4.8 [Caenorhabditis elegans] 5.0E-19
blast CAE72210 Hypothetical protein CBG19321 [Caenorhabditis briggsae] 3.0E-11
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_505481.1 1 21-43
T06E4.9 1 21-43
GENEFINDER00000007455 1 21-43
Sequence
Target Sequence 
>C. ELEGANS:172207_X_AT
gagtctacgagacaccgaagtatattcatcagacgatcactacttttcttctcatcatgc
aaaccttctcatctcttcttcttgctttgggtcttttctctgaagcttctgctcaattgg
ctgcctggccatcgcagagttactctccattctaccaagcattgtttggtggtgctagca
ccccagttctctctgctccagttgcaaaaaccgctccatctgcaattccactcgctgctc
cagctcttccagttccagttgctgctgcgccattcttcgcatcaccagcaccagtgctcg
cagctccagctccacttttggctccaccagctccagtcttcgctgccccacgaccagtct
tcgctgccccagctcttgctccagttgctccaatggccccagttcttcgtggtccagctt
tcgcctacgctccatctccagttcttgctccagttggagtcgccccagttgccccagctc
cagtcttcgctgctccagcttttgcaccagttgctccagttcttgctgccccaagatttg
tcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGTCTACGAGACACCGAAGTATAT 537 399 44 Antisense
TCAGACGATCACTACTTTTCTTCTC 43 625 72 Antisense
TTCTCATCATGCAAACCTTCTCATC 122 693 92 Antisense
CTTTGGGTCTTTTCTCTGAAGCTTC 54 223 128 Antisense
TGAAGCTTCTGCTCAATTGGCTGCC 167 575 144 Antisense
TGGCCATCGCAGAGTTACTCTCCAT 235 545 169 Antisense
ACTCTCCATTCTACCAAGCATTGTT 40 101 185 Antisense
GTTCTCTCTGCTCCAGTTGCAAAAA 611 443 229 Antisense
TGCAAAAACCGCTCCATCTGCAATT 440 575 246 Antisense
TTCTTGCTCCAGTTGGAGTCGCCCC 652 689 485 Antisense
GTTCTTGCTGCCCCAAGATTTGTCC 489 443 562 Antisense
Sequence Source Affymetrix Proprietary Database