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[172206_x_at]

Description W05H5.2 /REP_DB=WormBase Gene ID /WP=CE14638 /TR=P91839 /GB=CAB03478.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 45      4grp_total > 20      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 162
1 2 3 4 range
A 78.2
(0.2)
A 		70.5
(-0.2)
A 		12.1
(-3)
A 		137.1
(3)
A 		125
B 90.6
(2.7)
A 		58.3
(-3)
A 		63.1
(-2.1)
A 		92.1
(3)
A 		34
C 51.6
(-2.7)
A 		72.4
(-1.7)
A 		44.7
(-3)
A 		174
(3)
P 		129
avr 73.5
(-0.9) 		67.1
(-1.3) 		40
(-3) 		134.4
(3) 		94

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 98
1 2 3 4 5 6 range
A 28.9
(-1.2)
A 		10.7
(-3)
A 		52.3
(1.2)
A 		43.8
(0.3)
A 		27.5
(-1.3)
A 		70.3
(3)
A 		60
B 69.3
(3)
A 		24.9
(-1.2)
A 		55.5
(1.7)
A 		68.7
(2.9)
A 		5.8
(-3)
A 		24.4
(-1.2)
A 		64
C 57.7
(0.1)
A 		103.3
(3)
A 		51.4
(-0.3)
A 		10
(-3)
A 		38.6
(-1.2)
A 		54.4
(-0.1)
A 		93
avr 52
(2.8) 		46.3
(1.6) 		53.1
(3) 		40.8
(0.5) 		24
(-3) 		49.7
(2.3) 		29
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 26
1 2 3 4 range
A 28.5
(3)
A 		15.3
(-0.1)
A 		3.2
(-3)
A 		20.1
(1)
A 		25
B 28.9
(3)
A 		14.4
(-3)
A 		14.6
(-2.9)
A 		19.6
(-0.8)
A 		15
C 17.1
(-2.3)
A 		20.8
(-0.7)
A 		15.6
(-3)
A 		29.3
(3)
P 		14
avr 24.8
(3) 		16.8
(-0.5) 		11.1
(-3) 		23
(2.2) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 30
1 2 3 4 5 6 range
A 5.3
(-2.3)
A 		3.8
(-3)
A 		11.4
(0.4)
A 		11.1
(0.3)
A 		8.3
(-1)
A 		17.1
(3)
A 		13
B 24.1
(3)
A 		8.3
(-1.4)
A 		13.5
(0.1)
A 		18.2
(1.4)
A 		2.4
(-3)
A 		9.1
(-1.1)
A 		22
C 21.4
(0.9)
A 		31.5
(3)
A 		13.1
(-0.7)
A 		2
(-3)
A 		12.5
(-0.9)
A 		18.2
(0.3)
A 		30
avr 16.9
(3) 		14.5
(1.4) 		12.7
(0.3) 		10.4
(-1.2) 		7.7
(-3) 		14.8
(1.6) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172206_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3042
Sequence Type Exemplar sequence
Representative Public ID W05H5.2 NCBI
Target Description W05H5.2 /REP_DB=WormBase Gene ID /WP=CE14638 /TR=P91839 /GB=CAB03478.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064243(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064243 NCBI Caenorhabditis elegans W05H5.2 (W05H5.2) mRNA, complete cds. 11/11 None
W05H5.2 ENSEMBL cdna:known chromosome:CEL140:II:12442045:12442270:1 gene:W05H5.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_074099 1/11 Cross Hyb Matching Probes A 
NM_062798 1/11 Cross Hyb Matching Probes A 
GENEFINDER00000019754 2/11 Cross Hyb Matching Probes None
GENEFINDER00000041694 2/11 Cross Hyb Matching Probes None
GENEFINDER00000021618 1/11 Cross Hyb Matching Probes None
ZK84.4 1/11 Cross Hyb Matching Probes A 
AH10.4 1/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:12442041-12442267(+) 77.56 100.0
Public Domain and Genome References
Gene Title
Ensembl W05H5.2
Entrez Gene 189223 Entrez gene
SwissProt P91839 EMBL-EBI
WormBase CE14638 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03478 Hypothetical protein W05H5.2 [Caenorhabditis elegans] ref|NP_496644.1| W05H5.2 [Caenorhabditis elegans] 4.0E-16
Sequence
Target Sequence 
>C. ELEGANS:172206_X_AT
atgcacgaggggcctctgaaaagaagattttcggagttgtttaatttccctgattcctat
ccatcaaaagacaaggaagaagagaactcaacaaggaagaagagaacttgctgcacaacg
gaaaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGCACGAGGGGCCTCTGAAAAGAA 600 41 13 Antisense
GAGGGGCCTCTGAAAAGAAGATTTT 201 401 19 Antisense
TTCGGAGTTGTTTAATTTCCCTGAT 603 689 42 Antisense
GAGTTGTTTAATTTCCCTGATTCCT 449 397 46 Antisense
TTTAATTTCCCTGATTCCTATCCAT 662 671 52 Antisense
TTTCCCTGATTCCTATCCATCAAAA 167 671 57 Antisense
CCCTGATTCCTATCCATCAAAAGAC 152 261 60 Antisense
GATTCCTATCCATCAAAAGACAAGG 43 431 64 Antisense
GAAGAGAACTCAACAAGGAAGAAGA 402 335 91 Antisense
GAAGAAGAGAACTTGCTGCACAACG 207 341 108 Antisense
GAGAACTTGCTGCACAACGGAAAAA 413 391 114 Antisense
Sequence Source Affymetrix Proprietary Database