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[172205_at]

Description C29F7.7 /REP_DB=WormBase Gene ID /WP=CE08448 /TR=O17623 /GB=CAB07329.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 28      4grp_total > 35      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 49
1 2 3 4 range
A 5.3
(-3)
A 		34.3
(3)
A 		11.4
(-1.7)
A 		20.9
(0.2)
A 		29
B 3.3
(-2.7)
A 		45.7
(3)
A 		1.4
(-3)
A 		30.1
(0.9)
A 		44
C 21.2
(-0.5)
A 		50.1
(3)
A 		0.9
(-3)
A 		30.9
(0.7)
A 		49
avr 9.9
(-2.2) 		43.4
(3) 		4.6
(-3) 		27.3
(0.5) 		39

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 33
1 2 3 4 5 6 range
A 35.7
(3)
A 		2.3
(-3)
A 		4.7
(-2.6)
A 		9.2
(-1.8)
A 		17.1
(-0.3)
A 		34.5
(2.8)
A 		33
B 21.1
(3)
A 		18
(2)
A 		2.7
(-3)
A 		4.5
(-2.4)
A 		3.7
(-2.7)
A 		10.6
(-0.4)
A 		18
C 13.2
(-0.7)
A 		7.9
(-2.4)
A 		24.6
(3)
A 		6.4
(-2.9)
A 		20.9
(1.8)
A 		6
(-3)
A 		19
avr 23.3
(3) 		9.4
(-2) 		10.7
(-1.6) 		6.7
(-3) 		13.9
(-0.4) 		17
(0.7) 		17
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 1.9
(-3)
A 		7.4
(3)
A 		3
(-1.8)
A 		3.1
(-1.7)
A 		6
B 1
(-2.6)
A 		11.3
(3)
A 		0.3
(-3)
A 		6.4
(0.3)
A 		11
C 7
(-0.1)
A 		14.4
(3)
A 		0.3
(-3)
A 		5.2
(-0.9)
A 		14
avr 3.3
(-1.7) 		11
(3) 		1.2
(-3) 		4.9
(-0.7) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 8
1 2 3 4 5 6 range
A 6.6
(1.6)
A 		0.8
(-3)
A 		1
(-2.8)
A 		2.3
(-1.8)
A 		5.2
(0.5)
A 		8.4
(3)
A 		8
B 7.3
(3)
A 		6
(1.8)
A 		0.7
(-3)
A 		1.2
(-2.5)
A 		1.5
(-2.3)
A 		3.9
(-0.1)
A 		7
C 4.9
(0.9)
A 		2.4
(-1.8)
A 		6.3
(2.5)
A 		1.3
(-3)
A 		6.8
(3)
A 		2
(-2.2)
A 		6
avr 6.3
(3) 		3.1
(-1.1) 		2.7
(-1.6) 		1.6
(-3) 		4.5
(0.7) 		4.8
(1.1) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 172205_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17388
Sequence Type Exemplar sequence
Representative Public ID C29F7.7 NCBI
Target Description C29F7.7 /REP_DB=WormBase Gene ID /WP=CE08448 /TR=O17623 /GB=CAB07329.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077839(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077839 NCBI Caenorhabditis elegans C29F7.7 (C29F7.7) mRNA, complete cds. 11/11 None
C29F7.7 ENSEMBL cdna:known chromosome:CEL140:X:13442090:13442342:-1 gene:C29F7.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:13442089-13442342(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C29F7.7
Entrez Gene 183017 Entrez gene
SwissProt O17623 EMBL-EBI
WormBase CE08448 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB07329 Hypothetical protein C29F7.7 [Caenorhabditis elegans] ref|NP_510240.1| C29F7.7 [Caenorhabditis elegans] 6.0E-25
Sequence
Target Sequence 
>C. ELEGANS:172205_AT
tacagcaaaaaaggcttccagcttcatggaaagcacattctatcccaaacctcaacgcga
tgcttctgtaaaaggaatggctgcaattttccaacttcctttgctg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TACAGCAAAAAAGGCTTCCAGCTTC 581 641 28 Antisense
GCAAAAAAGGCTTCCAGCTTCATGG 289 317 32 Antisense
AAAGGCTTCCAGCTTCATGGAAAGC 434 121 37 Antisense
GGCTTCCAGCTTCATGGAAAGCACA 489 537 40 Antisense
GGAAAGCACATTCTATCCCAAACCT 363 527 55 Antisense
CAAACCTCAACGCGATGCTTCTGTA 692 191 73 Antisense
ACCTCAACGCGATGCTTCTGTAAAA 611 87 76 Antisense
TCAACGCGATGCTTCTGTAAAAGGA 121 629 79 Antisense
GCGATGCTTCTGTAAAAGGAATGGC 33 289 84 Antisense
AAAGGAATGGCTGCAATTTTCCAAC 530 119 98 Antisense
TGCAATTTTCCAACTTCCTTTGCTG 277 573 109 Antisense
Sequence Source Affymetrix Proprietary Database