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[172203_x_at]

Description Y41E3.8 /REP_DB=WormBase Gene ID /WP=CE18376 /TR=O62437 /GB=CAB09004.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 43      6grp_high1_10_10 > 34      4grp_highest_8_8 > 13      4grp_high_8_8 > 23      6grp_highest_nonorm > 73      6grp_total > 01      4grp_total > 24      6grp_highest_sub > 02      6grp_high1_sub > 02      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 657
1 2 3 4 range
A 335.2
(-3)
P 		409
(-2.1)
P 		669.3
(1.1)
P 		821.7
(3)
P 		487
B 357.8
(-3)
P 		489.2
(-1.8)
P 		883.4
(2)
P 		992.2
(3)
P 		634
C 592
(-1.6)
P 		638.6
(-0.1)
P 		548.2
(-3)
P 		736.6
(3)
P 		188
avr 428.3
(-3) 		512.3
(-1.8) 		700.3
(0.9) 		850.2
(3) 		422

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 752
1 2 3 4 5 6 range
A 490.6
(-2.8)
P 		1089.6
(3)
P 		470.7
(-3)
P 		644.6
(-1.3)
P 		674.6
(-1)
P 		483.5
(-2.9)
P 		619
B 381.2
(-3)
P 		721.4
(3)
P 		543.6
(-0.1)
P 		534.7
(-0.3)
P 		547.6
(-0.1)
P 		700.6
(2.6)
P 		340
C 701.4
(3)
P 		612.2
(1.5)
P 		475.9
(-0.7)
P 		337.3
(-3)
P 		688.1
(2.8)
P 		509.1
(-0.2)
P 		364
avr 524.4
(-2.5) 		807.7
(3) 		496.7
(-3) 		505.5
(-2.8) 		636.8
(-0.3) 		564.4
(-1.7) 		311
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 123
1 2 3 4 range
A 122.1
(-0.7)
P 		88.8
(-3)
P 		175
(3)
P 		120.3
(-0.8)
P 		86
B 114.1
(-3)
P 		120.8
(-2.6)
P 		204.7
(2.6)
P 		211.4
(3)
P 		97
C 196
(3)
P 		183.6
(2)
P 		191.1
(2.6)
P 		124.2
(-3)
P 		72
avr 144.1
(-1.7) 		131.1
(-3) 		190.3
(3) 		152
(-0.9) 		59

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 320
1 2 3 4 5 6 range
A 90.4
(-3)
P 		387.5
(3)
P 		102.5
(-2.8)
P 		163.5
(-1.5)
P 		203.6
(-0.7)
P 		117.7
(-2.4)
P 		297
B 132.6
(-3)
P 		240.1
(2)
P 		132
(-3)
P 		141.6
(-2.6)
P 		222.5
(1.2)
P 		261.3
(3)
P 		129
C 260
(3)
P 		186.8
(0.7)
P 		121.1
(-1.3)
P 		67.8
(-3)
P 		222.6
(1.8)
P 		170.4
(0.2)
P 		192
avr 161
(-1.3) 		271.5
(3) 		118.5
(-3) 		124.3
(-2.8) 		216.2
(0.8) 		183.1
(-0.5) 		153
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172203_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10209
Sequence Type Exemplar sequence
Representative Public ID Y41E3.8 NCBI
Target Description Y41E3.8 /REP_DB=WormBase Gene ID /WP=CE18376 /TR=O62437 /GB=CAB09004.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070414(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070414 NCBI Caenorhabditis elegans Y41E3.8 (Y41E3.8) mRNA, complete cds. 11/11 None
SNAP00000001443 ENSEMBL cdna:SNAP chromosome:CEL140:IV:15028432:15036780:-1 11/11 None
GENEFINDER00000001478 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:15028432:15028769:-1 10/11 None
Y41E3.8 ENSEMBL cdna:known chromosome:CEL140:IV:15028345:15028934:-1 gene:Y41E3.8 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_068716 1/11 Cross Hyb Matching Probes A 
SNAP00000003799 1/11 Cross Hyb Matching Probes None
C34D4.11 1/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:15028437-15028913(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y41E3.8
Entrez Gene 178417 Entrez gene
SwissProt O62437 EMBL-EBI
WormBase CE18376 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB09004 Hypothetical protein Y41E3.8 [Caenorhabditis elegans] ref|NP_502815.1| Y41E3.8 [Caenorhabditis elegans] 2.0E-25
blast CAB09004 Hypothetical protein Y41E3.8 [Caenorhabditis elegans] ref|NP_502815.1| Y41E3.8 [Caenorhabditis elegans] 3.0E-21
blast CAB09004 Hypothetical protein Y41E3.8 [Caenorhabditis elegans] ref|NP_502815.1| Y41E3.8 [Caenorhabditis elegans] 1.0E-13
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_502815.1 1 15-37
Y41E3.8 1 15-37
SNAP00000001443 1 43-65
Sequence
Target Sequence 
>C. ELEGANS:172203_X_AT
gagatgatcgtcggattcttcacatttatcatgttattcttccgctcactgctcggcttc
acatctcctacaaaccgaaacagcaattctcaagactaccggaatattgttcgaggcggc
ggagttaacggagcaggcggcggtggaaatgcctacaggcggaatggaggcggtggaggt
ggaggcggaagaaacatcggaggacttccaacatcatccggagtcgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGATGATCGTCGGATTCTTCACAT 25 397 70 Antisense
GGATTCTTCACATTTATCATGTTAT 411 509 82 Antisense
TTTATCATGTTATTCTTCCGCTCAC 58 675 94 Antisense
CACATCTCCTACAAACCGAAACAGC 389 193 129 Antisense
AGCAATTCTCAAGACTACCGGAATA 238 75 151 Antisense
GAATATTGTTCGAGGCGGCGGAGTT 640 323 171 Antisense
CGGAGTTAACGGAGCAGGCGGCGGT 321 235 189 Antisense
GGCGGCGGTGGAAATGCCTACAGGC 287 539 205 Antisense
TGGAGGCGGTGGAGGTGGAGGCGGA 377 549 234 Antisense
GAAACATCGGAGGACTTCCAACATC 50 357 260 Antisense
GACTTCCAACATCATCCGGAGTCGC 56 369 272 Antisense
Sequence Source Affymetrix Proprietary Database