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[172202_x_at]

Description F11F1.5 /REP_DB=WormBase Gene ID /WP=CE15805 /TR=Q9XVQ5 /GB=CAB02927.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 94      4grp_total > 47      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 57
1 2 3 4 range
A 20.5
(1.2)
A 		27.1
(3)
A 		5.1
(-3)
A 		8.7
(-2)
A 		22
B 26.2
(0.5)
A 		5
(-3)
A 		41.8
(3)
A 		11.6
(-1.9)
A 		37
C 58.3
(3)
A 		19
(-1.2)
A 		1.8
(-3)
A 		32.7
(0.3)
A 		57
avr 35
(3) 		17
(-2.7) 		16.2
(-3) 		17.7
(-2.5) 		19

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 48
1 2 3 4 5 6 range
A 5.9
(-2.4)
A 		25
(0)
A 		1.2
(-3)
A 		2.5
(-2.8)
A 		48.6
(3)
A 		14.4
(-1.3)
A 		47
B 1.7
(-3)
A 		30.6
(3)
A 		4.1
(-2.5)
A 		11.3
(-1)
A 		4.6
(-2.4)
A 		12.5
(-0.8)
A 		29
C 3.2
(-2.5)
A 		4.8
(-2.1)
A 		6
(-1.8)
A 		27.1
(3)
A 		0.8
(-3)
A 		18.9
(1.1)
A 		26
avr 3.6
(-3) 		20.1
(3) 		3.8
(-2.9) 		13.6
(0.6) 		18
(2.2) 		15.3
(1.3) 		17
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 7.5
(3)
A 		5.9
(1.5)
A 		1.3
(-3)
A 		1.3
(-3)
A 		6
B 8.4
(2.1)
A 		1.2
(-3)
A 		9.7
(3)
A 		2.5
(-2.1)
A 		9
C 19.3
(3)
A 		5.5
(-1.4)
A 		0.6
(-3)
A 		5.5
(-1.4)
A 		19
avr 11.7
(3) 		4.2
(-2.2) 		3.9
(-2.4) 		3.1
(-3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 1.1
(-2.7)
A 		8.9
(0.6)
A 		0.3
(-3)
A 		0.6
(-2.9)
A 		14.7
(3)
A 		3.5
(-1.7)
A 		14
B 0.6
(-3)
A 		10.2
(3)
A 		1
(-2.8)
A 		3
(-1.5)
A 		1.9
(-2.2)
A 		4.7
(-0.4)
A 		10
C 1.2
(-2.1)
A 		1.5
(-1.8)
A 		1.5
(-1.8)
A 		5.4
(2.1)
A 		0.3
(-3)
A 		6.3
(3)
A 		6
avr 1
(-2.9) 		6.9
(3) 		0.9
(-3) 		3
(-0.9) 		5.6
(1.7) 		4.8
(0.9) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172202_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6510
Sequence Type Exemplar sequence
Representative Public ID F11F1.5 NCBI
Target Description F11F1.5 /REP_DB=WormBase Gene ID /WP=CE15805 /TR=Q9XVQ5 /GB=CAB02927.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067364(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067364 NCBI Caenorhabditis elegans F11F1.5 (F11F1.5) mRNA, complete cds. 11/11 None
SNAP00000021813 ENSEMBL cdna:SNAP chromosome:CEL140:III:13401724:13402552:1 11/11 None
GENEFINDER00000021818 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:13401724:13402552:1 11/11 None
F11F1.5 ENSEMBL cdna:known chromosome:CEL140:III:13401724:13402552:1 gene:F11F1.5 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_067362 1/11 Cross Hyb Matching Probes A 
NM_001026079 1/11 Cross Hyb Matching Probes None
SNAP00000021811 1/11 Cross Hyb Matching Probes None
GENEFINDER00000021820 1/11 Cross Hyb Matching Probes None
F11F1.2 1/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:13401719-13402548(+) 100.0 100.0
chrIII:13397272-13401285(-) 90.28 90.28
Public Domain and Genome References
Gene Title
Ensembl F11F1.5
Entrez Gene 184361 Entrez gene
SwissProt Q9XVQ5 EMBL-EBI
WormBase CE15805 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB02927 Hypothetical protein F11F1.5 [Caenorhabditis elegans] ref|NP_499765.1| F11F1.5 [Caenorhabditis elegans] 1.0E-79
blast CAB02925 Hypothetical protein F11F1.2 [Caenorhabditis elegans] ref|NP_499763.1| F11F1.2 [Caenorhabditis elegans] 2.0E-69
blast CAB02926 Hypothetical protein F11F1.4 [Caenorhabditis elegans] ref|NP_499764.1| F11F1.4 [Caenorhabditis elegans] 2.0E-56
Protein Domains
Database ID Description E-Value
scop a.4.5.Restriction endonuclease FokI, N-terminal (recognition) domain All alpha proteins; DNA/RNA-binding 3-helical bundle; "Winged helix" DNA-binding domain; Restriction endonuclease FokI, N-terminal (recognition) domain 4.80000019073486
Pfam IPR003677 EMBL-EBI Protein of unknown function, DUF 148 1.4E-32
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_499765.1 1 7-29
F11F1.5 1 7-29
SNAP00000021813 1 7-29
GENEFINDER00000021818 1 7-29
Sequence
Target Sequence 
>C. ELEGANS:172202_X_AT
ttactggatttgtctcttcttggagatggactcacacaacaaattattgaacttgttaaa
aagattccaggtagtgctctccctagagtacaagaaattctctcaaatgcggataatctt
ggagttgatgaagttatatccaaacttaacggtcttgtacctggtcttggagatgagctt
aacaatcttatttcaacaatcttcacccttatcaaacagttgctcaatgaagttgccgat
attcttcaaagtcttccagatattttaggaaaattgtctaaaatcgtggatgacaaaaat
ctaacatctattgagaagaacaatgctatcaatcaattgaaaggaacaaataaaattgaa
ctcaatacaattatcttcattatcactcaactcctcaacggaggggcacttc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTACTGGATTTGTCTCTTCTTGGAG 452 683 310 Antisense
GGAGATGGACTCACACAACAAATTA 371 519 331 Antisense
AAAGATTCCAGGTAGTGCTCTCCCT 230 123 369 Antisense
ATTCTCTCAAATGCGGATAATCTTG 684 9 406 Antisense
TATATCCAAACTTAACGGTCTTGTA 152 661 444 Antisense
TAACGGTCTTGTACCTGGTCTTGGA 154 639 456 Antisense
CTTATTTCAACAATCTTCACCCTTA 479 221 496 Antisense
TTCACCCTTATCAAACAGTTGCTCA 199 687 511 Antisense
GCCGATATTCTTCAAAGTCTTCCAG 207 285 544 Antisense
TTATCTTCATTATCACTCAACTCCT 356 679 680 Antisense
CAACTCCTCAACGGAGGGGCACTTC 68 187 697 Antisense
Sequence Source Affymetrix Proprietary Database