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[172201_x_at]

Description ZC376.8 /REP_DB=WormBase Gene ID /WP=CE18434 /TR=O62502 /GB=CAB00885.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 98      4grp_total > 18      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 2.7
(-3)
A 		6.8
(3)
A 		3.8
(-1.4)
A 		5.7
(1.4)
A 		4
B 3.9
(-3)
A 		5.2
(-2.6)
A 		4.5
(-2.8)
A 		21.8
(3)
A 		18
C 5.4
(1)
A 		6.3
(3)
A 		3.6
(-3)
A 		4.8
(-0.3)
A 		3
avr 4
(-3) 		6.1
(-1.1) 		4
(-3) 		10.8
(3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 114
1 2 3 4 5 6 range
A 3.8
(-3)
A 		4.8
(-2.9)
A 		14.6
(-2.3)
A 		6.2
(-2.9)
A 		102.9
(3)
P 		75.4
(1.3)
P 		99
B 2
(-3)
A 		1.7
(-3)
A 		2.4
(-3)
A 		3.7
(-2.9)
A 		50.7
(-0)
A 		100.8
(3)
M 		99
C 1.9
(-3)
A 		2.4
(-3)
A 		1.9
(-3)
A 		5.2
(-2.8)
A 		52.4
(-0.3)
A 		116
(3)
M 		114
avr 2.6
(-3) 		3
(-3) 		6.3
(-2.8) 		5
(-2.8) 		68.7
(1.2) 		97.4
(3) 		95
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4
1 2 3 4 range
A 1
(-1.3)
A 		1.5
(3)
A 		1
(-1.3)
A 		0.8
(-3)
A 		1
B 1.2
(-2.7)
A 		1.3
(-2.5)
A 		1
(-3)
A 		4.7
(3)
A 		4
C 1.8
(3)
A 		1.8
(3)
A 		1.2
(-0.6)
A 		0.8
(-3)
A 		1
avr 1.3
(-1.8) 		1.5
(-0.6) 		1.1
(-3) 		2.1
(3) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 38
1 2 3 4 5 6 range
A 0.7
(-3)
A 		1.7
(-2.8)
A 		3.2
(-2.5)
A 		1.6
(-2.8)
A 		31
(3)
P 		18.4
(0.5)
P 		30
B 0.7
(-3)
A 		0.6
(-3)
A 		0.6
(-3)
A 		1
(-2.9)
A 		20.6
(0.2)
A 		37.6
(3)
M 		37
C 0.7
(-3)
A 		0.7
(-3)
A 		0.5
(-3)
A 		1
(-2.9)
A 		17
(-0.4)
A 		38.8
(3)
M 		38
avr 0.7
(-3) 		1
(-2.9) 		1.4
(-2.9) 		1.2
(-2.9) 		22.9
(1.3) 		31.6
(3) 		31
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172201_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14528
Sequence Type Exemplar sequence
Representative Public ID ZC376.8 NCBI
Target Description ZC376.8 /REP_DB=WormBase Gene ID /WP=CE18434 /TR=O62502 /GB=CAB00885.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074111
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000015362 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:14182899:14184097:1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_074111 8/11 Cross Hyb Matching Probes None
NM_058871 2/11 Cross Hyb Matching Probes A 
NM_058872 2/11 Cross Hyb Matching Probes A 
SNAP00000030464 2/11 Cross Hyb Matching Probes None
GENEFINDER00000030471 2/11 Cross Hyb Matching Probes None
SNAP00000030465 2/11 Cross Hyb Matching Probes None
GENEFINDER00000030473 2/11 Cross Hyb Matching Probes None
SNAP00000015357 8/11 Cross Hyb Matching Probes None
F47B3.4 2/11 Cross Hyb Matching Probes A 
F47B3.5 2/11 Cross Hyb Matching Probes A 
ZC376.8 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:14182898-14184097(+) 96.12 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB00885 Hypothetical protein ZC376.8 [Caenorhabditis elegans] ref|NP_506512.2| ZC376.8 [Caenorhabditis elegans] 8.0E-43
blast AAB52360 Hypothetical protein F47B3.5 [Caenorhabditis elegans] ref|NP_491273.1| F47B3.5 [Caenorhabditis elegans] 1.0E-41
blast AAB52359 Hypothetical protein F47B3.4 [Caenorhabditis elegans] ref|NP_491272.1| F47B3.4 [Caenorhabditis elegans] 1.0E-41
Protein Domains
Database ID Description E-Value
Pfam IPR004296 EMBL-EBI Protein of unknown function DUF236 1.2E-7
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000015362 1 15-34
Sequence
Target Sequence 
>C. ELEGANS:172201_X_AT
gaagagcccgcgaaatccaaaaagagtgagaaaaaggagaagtccaagaatgagggaagc
aagaaggaggaggataaggaaaaggaaaaggaaaaatcgaacaaagcggaggataaaaag
tcagaagatccaaagaaggaggatgctaagaagccagatgtcaaaggaaaggatactttc
aagaaaccagtggatgaatctgcggtcgctcctaaaaaggatcctaattatcaggtaatt
tcagacggaggacaagaagttttaggtttagtgactctctgcggattgaacaatgatctc
ttcggaccggacaaaaacccgaaaaagcagttcaaagcacccacaaaagttgaaaaagct
gatgtgaaagatccccaatacgaaacattgaatggattgggtgaagaaatgttcaaggac
gagaagaaagatgatgaaggaaagaagaaggagttcaagcaaccggataaagtgcaaaag
gctgatgcaaaggatccacaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAGAGCCCGCGAAATCCAAAAAGA 362 339 271 Antisense
CAGTGGATGAATCTGCGGTCGCTCC 136 209 458 Antisense
GCGGTCGCTCCTAAAAAGGATCCTA 620 291 472 Antisense
TATCAGGTAATTTCAGACGGAGGAC 133 47 499 Antisense
GTTTTAGGTTTAGTGACTCTCTGCG 48 449 529 Antisense
GTGACTCTCTGCGGATTGAACAATG 319 481 541 Antisense
ACAATGATCTCTTCGGACCGGACAA 657 113 560 Antisense
AAAAGCAGTTCAAAGCACCCACAAA 547 131 593 Antisense
GTGAAAGATCCCCAATACGAAACAT 644 471 634 Antisense
GAAGGAGTTCAAGCAACCGGATAAA 421 333 717 Antisense
AAGGCTGATGCAAAGGATCCACAAT 230 161 748 Antisense
Sequence Source Affymetrix Proprietary Database