[Home] | [Total List]

[172199_x_at]

Description K03B8.4 /REP_DB=WormBase Gene ID /WP=CE06078 /TR=Q21177 /GB=CAA98500.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 36      6grp_total > 48      4grp_total > 0      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 206
1 2 3 4 range
A 57
(-3)
A 		78.1
(-1.6)
A 		80
(-1.5)
M 		149.5
(3)
P 		93
B 97.4
(1.5)
P 		52
(-3)
M 		99
(1.7)
P 		112.2
(3)
P 		60
C 99.4
(-0.4)
P 		11.1
(-3)
A 		86.6
(-0.8)
A 		217.1
(3)
P 		206
avr 84.6
(-1) 		47.1
(-3) 		88.5
(-0.8) 		159.6
(3) 		113

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 135
1 2 3 4 5 6 range
A 98.1
(0.2)
A 		48.6
(-3)
A 		137.2
(2.8)
P 		49.6
(-2.9)
A 		87.2
(-0.5)
P 		140.3
(3)
P 		92
B 175.4
(3)
P 		68
(-3)
M 		87.5
(-1.9)
P 		97.5
(-1.4)
P 		81.5
(-2.2)
P 		87.1
(-1.9)
P 		107
C 77.4
(-0.2)
P 		120.1
(3)
P 		40.7
(-3)
A 		83.6
(0.2)
M 		61.2
(-1.5)
P 		87.7
(0.6)
P 		79
avr 117
(3) 		78.9
(-2.7) 		88.5
(-1.2) 		76.9
(-3) 		76.6
(-3) 		105
(1.2) 		40
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 33
1 2 3 4 range
A 20.8
(1.7)
A 		17
(-3)
A 		20.9
(1.8)
M 		21.9
(3)
P 		5
B 31.1
(3)
P 		12.9
(-3)
M 		22.9
(0.3)
P 		23.9
(0.6)
P 		18
C 32.9
(2.3)
P 		3.2
(-3)
A 		30.2
(1.9)
A 		36.6
(3)
P 		33
avr 28.3
(3) 		11
(-3) 		24.7
(1.8) 		27.5
(2.7) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 51
1 2 3 4 5 6 range
A 18.1
(-1.5)
A 		17.3
(-1.7)
A 		29.9
(1.8)
P 		12.6
(-3)
A 		26.3
(0.8)
P 		34.2
(3)
P 		22
B 61
(3)
P 		22.6
(-2.8)
M 		21.2
(-3)
P 		25.8
(-2.3)
P 		33.1
(-1.2)
P 		32.5
(-1.3)
P 		40
C 28.7
(1.2)
P 		36.6
(3)
P 		10.4
(-3)
A 		16.8
(-1.5)
M 		19.8
(-0.8)
P 		29.4
(1.4)
P 		26
avr 35.9
(3) 		25.5
(-0.6) 		20.5
(-2.3) 		18.4
(-3) 		26.4
(-0.3) 		32
(1.7) 		18
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172199_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13424
Sequence Type Exemplar sequence
Representative Public ID K03B8.4 NCBI
Target Description K03B8.4 /REP_DB=WormBase Gene ID /WP=CE06078 /TR=Q21177 /GB=CAA98500.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077570(9), NM_073489(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077570 NCBI Caenorhabditis elegans C40H5.6 (C40H5.6) mRNA, complete cds. 9/11 A 
NM_073489 NCBI Caenorhabditis elegans K03B8.4 (K03B8.4) mRNA, complete cds. 11/11 None
SNAP00000002776 ENSEMBL cdna:SNAP chromosome:CEL140:V:11397374:11398484:-1 11/11 None
GENEFINDER00000002804 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:11397073:11397712:-1 11/11 None
SNAP00000010975 ENSEMBL cdna:SNAP chromosome:CEL140:X:11775458:11776495:1 9/11 None
GENEFINDER00000010981 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:11776156:11776832:1 9/11 None
K03B8.4 ENSEMBL cdna:known chromosome:CEL140:V:11397374:11397712:-1 gene:K03B8.4 11/11 None
C40H5.6 ENSEMBL cdna:known chromosome:CEL140:X:11775111:11776495:1 gene:C40H5.6 9/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_058928 6/11 Cross Hyb Matching Probes A B 
SNAP00000003658 6/11 Cross Hyb Matching Probes None
GENEFINDER00000003670 6/11 Cross Hyb Matching Probes None
C18E3.2.1 6/11 Cross Hyb Matching Probes A B 
C18E3.2.2 5/11 Cross Hyb Matching Probes A B 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:11776155-11776495(+) 98.97 98.97
chrV:11397373-11397712(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K03B8.4
C40H5.6
Entrez Gene 186925 Entrez gene
SwissProt Q21177 EMBL-EBI
WormBase CE06078 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_509971 C40H5.6 [Caenorhabditis elegans] 0.0
blast NP_509971 C40H5.6 [Caenorhabditis elegans] 1.0E-148
blast NP_509971 C40H5.6 [Caenorhabditis elegans] 4.0E-64
blast AAK82899 Hypothetical protein F59E12.5b [Caenorhabditis elegans] ref|NP_495093.1| F59E12.5b [Caenorhabditis elegans] 2.0E-51
blast AAB54255 Hypothetical protein F59E12.5a [Caenorhabditis elegans] ref|NP_495094.1| F59E12.5a [Caenorhabditis elegans] 2.0E-51
blast AAB52943 Hypothetical protein C18E3.2 [Caenorhabditis elegans] ref|NP_491329.2| C18E3.2 [Caenorhabditis elegans] 6.0E-47
blast AAB52943 Hypothetical protein C18E3.2 [Caenorhabditis elegans] ref|NP_491329.2| C18E3.2 [Caenorhabditis elegans] 2.0E-46
Protein Domains
Database ID Description E-Value
Pfam IPR007717 EMBL-EBI NPL4 1.6E-18
Pfam IPR007717 EMBL-EBI NPL4 1.6E-52
Pfam IPR007717 EMBL-EBI NPL4 1.3E-31
Sequence
Target Sequence 
>C. ELEGANS:172199_X_AT
gagccagaattcggacctgaagactatgaacgagctgagcggggatcttgaagccgaaag
attcgctgaatcctacgtgagacctgaaacagaggaaggagttcaaagatacatgttcca
aaaggtgaaccagaagcgacatgaattggagcaaatcttggtgttcgatcaaattaaggc
tccat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGCCAGAATTCGGACCTGAAGACT 703 383 15 Antisense
GGACCTGAAGACTATGAACGAGCTG 214 523 27 Antisense
AACGAGCTGAGCGGGGATCTTGAAG 362 145 43 Antisense
GAGCGGGGATCTTGAAGCCGAAAGA 243 385 51 Antisense
GATTCGCTGAATCCTACGTGAGACC 307 433 74 Antisense
GAATCCTACGTGAGACCTGAAACAG 262 331 82 Antisense
GAGTTCAAAGATACATGTTCCAAAA 238 399 113 Antisense
AAAGGTGAACCAGAAGCGACATGAA 352 119 135 Antisense
GAAGCGACATGAATTGGAGCAAATC 455 343 147 Antisense
GGAGCAAATCTTGGTGTTCGATCAA 201 521 162 Antisense
GTGTTCGATCAAATTAAGGCTCCAT 634 483 175 Antisense
Sequence Source Affymetrix Proprietary Database