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[172195_x_at]

Description T27C5.4 /REP_DB=WormBase Gene ID /WP=CE16498 /TR=O45848 /GB=CAB04865.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 25      4grp_total > 19      6grp_cgc > 14      6grp_cgc_sub > Cu      6grp_total_sub > Decrease      6grp_rule_based > S2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 130
1 2 3 4 range
A 23.9
(-3)
A 		36.3
(-0.7)
A 		29.9
(-1.9)
A 		56.5
(3)
A 		33
B 52.6
(0.1)
A 		58.8
(0.8)
A 		26.4
(-3)
A 		77.2
(3)
A 		51
C 18.2
(-2.5)
A 		31.7
(-1.8)
A 		6.6
(-3)
A 		136.7
(3)
P 		130
avr 31.6
(-2.1) 		42.3
(-1.2) 		21
(-3) 		90.1
(3) 		69

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 84
1 2 3 4 5 6 range
A 88.9
(3)
A 		35.1
(-1.1)
A 		38.4
(-0.8)
A 		9.8
(-3)
A 		11.5
(-2.9)
A 		11.7
(-2.9)
A 		79
B 56.2
(2)
A 		65.7
(3)
A 		15.1
(-2.1)
A 		9
(-2.7)
A 		6.3
(-3)
A 		22.7
(-1.3)
A 		59
C 27.3
(-1.3)
A 		83
(3)
A 		5
(-3)
A 		31.5
(-1)
A 		17
(-2.1)
A 		18.6
(-2)
A 		78
avr 57.5
(2.5) 		61.3
(3) 		19.5
(-2) 		16.8
(-2.4) 		11.6
(-3) 		17.7
(-2.3) 		50
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 21
1 2 3 4 range
A 8.7
(3)
A 		7.9
(-2.3)
A 		7.8
(-3)
A 		8.3
(0.3)
A 		1
B 16.8
(3)
A 		14.5
(1.7)
A 		6.1
(-3)
A 		16.4
(2.8)
A 		11
C 6
(-1.9)
A 		9.1
(-1)
A 		2.3
(-3)
A 		23.1
(3)
P 		21
avr 10.5
(-0.1) 		10.5
(-0.1) 		5.4
(-3) 		15.9
(3) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 24
1 2 3 4 5 6 range
A 16.4
(3)
A 		12.5
(1.3)
A 		8.4
(-0.5)
A 		2.5
(-3)
A 		3.5
(-2.6)
A 		2.8
(-2.9)
A 		14
B 19.5
(2.3)
A 		21.9
(3)
A 		3.7
(-2.6)
A 		2.4
(-3)
A 		2.6
(-2.9)
A 		8.5
(-1.1)
A 		20
C 10.1
(-0.8)
A 		25.3
(3)
A 		1.3
(-3)
A 		6.3
(-1.8)
A 		5.5
(-2)
A 		6.2
(-1.8)
A 		24
avr 15.3
(1.3) 		19.9
(3) 		4.5
(-2.7) 		3.7
(-3) 		3.9
(-2.9) 		5.8
(-2.2) 		16
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172195_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13922
Sequence Type Exemplar sequence
Representative Public ID T27C5.4 NCBI
Target Description T27C5.4 /REP_DB=WormBase Gene ID /WP=CE16498 /TR=O45848 /GB=CAB04865.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
T27C5.4 ENSEMBL cdna:pseudogene chromosome:CEL140:V:17408883:17410080:1 gene:T27C5.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000030291 7/11 Cross Hyb Matching Probes None
GENEFINDER00000030299 5/11 Cross Hyb Matching Probes None
T27C5.11 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:17409177-17410080(+) 100.0 100.0
chrV:16987069-16987967(+) 91.06 91.06
Public Domain and Genome References
Ensembl T27C5.4
Sequence
Target Sequence 
>C. ELEGANS:172195_X_AT
tgtattttcgccttgttttactattatttaccagacagtgtggtactcacaacattagtt
ttgcatggataacgtgctctatcaatgatgttcttgtatttctctcggctattttatata
ttccgattgttataagtattcgaaagttggtgaatttacagtcagctcaacattccaagc
cgcataaatatattttcttgcaaacaatggtggttttcacattcaaatcgattcaagttc
tcgcatacctcatgacaaatcataatggtatttccttaactagtttattcatttgtgcta
tagcagtgtcagactatatcaccacaccgttaattgtccaaatgtcatatctctcatgca
ataagaggaacatgaagcttttgctctcctcgatcagtgctcggaagttgtttaatgttc
tgctcaatctccaacc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGTATTTTCGCCTTGTTTTACTATT 596 559 14 Antisense
ATGATGTTCTTGTATTTCTCTCGGC 81 47 98 Antisense
TTCTCTCGGCTATTTTATATATTCC 80 693 113 Antisense
ACAGTCAGCTCAACATTCCAAGCCG 345 107 171 Antisense
TTCAAGTTCTCGCATACCTCATGAC 617 683 245 Antisense
TTGTGCTATAGCAGTGTCAGACTAT 412 707 306 Antisense
TCAGACTATATCACCACACCGTTAA 642 623 322 Antisense
GTCCAAATGTCATATCTCTCATGCA 430 477 349 Antisense
GAACATGAAGCTTTTGCTCTCCTCG 295 351 381 Antisense
CTCTCCTCGATCAGTGCTCGGAAGT 545 229 397 Antisense
TTAATGTTCTGCTCAATCTCCAACC 42 685 425 Antisense
Sequence Source Affymetrix Proprietary Database