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[172192_x_at]

Description F44F1.2 /REP_DB=WormBase Gene ID /WP=CE10414 /TR=O17871 /GB=CAB03100.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 01      4grp_total > 03      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 30
1 2 3 4 range
A 3.1
(-3)
A 		5
(-1.9)
A 		3.8
(-2.6)
A 		13.5
(3)
A 		10
B 6.7
(3)
A 		3.7
(-3)
A 		3.8
(-2.8)
A 		6.3
(2.2)
A 		3
C 7.4
(-2.2)
A 		7.2
(-2.2)
A 		3.2
(-3)
A 		33.5
(3)
A 		30
avr 5.7
(-2.1) 		5.3
(-2.3) 		3.6
(-3) 		17.8
(3) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 5.6
(1.3)
A 		6.5
(3)
A 		4.9
(0)
A 		3.3
(-3)
A 		4.3
(-1.1)
A 		3.4
(-2.8)
A 		3
B 2.7
(-2.8)
A 		4.6
(1.3)
A 		2.6
(-3)
A 		2.9
(-2.4)
A 		5.4
(3)
A 		4.8
(1.7)
A 		3
C 3.1
(-2.3)
A 		12.9
(3)
A 		2.7
(-2.5)
A 		4.2
(-1.7)
A 		1.7
(-3)
A 		3
(-2.3)
A 		11
avr 3.8
(-2.5) 		8
(3) 		3.4
(-3) 		3.5
(-2.9) 		3.8
(-2.5) 		3.7
(-2.6) 		5
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 5
1 2 3 4 range
A 1.1
(-2.4)
A 		1.1
(-2.4)
A 		1
(-3)
A 		2
(3)
A 		1
B 2.1
(3)
A 		0.9
(-3)
A 		0.9
(-3)
A 		1.3
(-1)
A 		1
C 2.5
(-1.1)
A 		2.1
(-1.7)
A 		1.1
(-3)
A 		5.6
(3)
A 		5
avr 1.9
(-0.3) 		1.4
(-1.8) 		1
(-3) 		3
(3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3
1 2 3 4 5 6 range
A 1
(-2.2)
A 		2.3
(3)
A 		1.1
(-1.8)
A 		0.8
(-3)
A 		1.3
(-1)
A 		0.8
(-3)
A 		2
B 0.9
(-1.9)
A 		1.5
(0.4)
A 		0.6
(-3)
A 		0.8
(-2.3)
A 		2.2
(3)
A 		1.8
(1.5)
A 		2
C 1.2
(-1.8)
A 		3.9
(3)
A 		0.7
(-2.6)
A 		0.8
(-2.5)
A 		0.5
(-3)
A 		1
(-2.1)
A 		3
avr 1
(-2.3) 		2.6
(3) 		0.8
(-3) 		0.8
(-3) 		1.3
(-1.3) 		1.2
(-1.7) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172192_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2127
Sequence Type Exemplar sequence
Representative Public ID F44F1.2 NCBI
Target Description F44F1.2 /REP_DB=WormBase Gene ID /WP=CE10414 /TR=O17871 /GB=CAB03100.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060925(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060925 NCBI Caenorhabditis elegans F44F1.2 (F44F1.2) mRNA, complete cds. 11/11 None
F44F1.2 ENSEMBL cdna:known chromosome:CEL140:I:13261513:13261659:1 gene:F44F1.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_075929 7/11 Cross Hyb Matching Probes A 
NM_077121 4/11 Cross Hyb Matching Probes A 
SNAP00000021822 7/11 Cross Hyb Matching Probes None
SNAP00000015866 8/11 Cross Hyb Matching Probes None
F31A9.1 7/11 Cross Hyb Matching Probes A 
C24A3.8 4/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Public Domain and Genome References
Gene Title
Ensembl F44F1.2
Entrez Gene 185745 Entrez gene
SwissProt O17871 EMBL-EBI
WormBase CE10414 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03100 Hypothetical protein F44F1.2 [Caenorhabditis elegans] ref|NP_493326.1| F44F1.2 [Caenorhabditis elegans] 7.0E-21
blast AAB00606 Hypothetical protein F31A9.1 [Caenorhabditis elegans] ref|NP_508330.1| F31A9.1 [Caenorhabditis elegans] 3.0E-18
blast AAA81462 Hypothetical protein C24A3.8 [Caenorhabditis elegans] ref|NP_509522.1| C24A3.8 [Caenorhabditis elegans] 2.0E-12
Sequence
Target Sequence 
>C. ELEGANS:172192_X_AT
tctcgccacgacacatacaacaacgactgcgaccgtactcttgtcatcatggcgcagcgc
acattggcctatatcgtcagtcgtcggcagt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCTCGCCACGACACATACAACAACG 221 611 19 Antisense
GCCACGACACATACAACAACGACTG 500 279 23 Antisense
GACACATACAACAACGACTGCGACC 355 367 28 Antisense
TACAACAACGACTGCGACCGTACTC 482 641 34 Antisense
TTGTCATCATGGCGCAGCGCACATT 592 707 59 Antisense
CATCATGGCGCAGCGCACATTGGCC 639 211 63 Antisense
TCATGGCGCAGCGCACATTGGCCTA 164 623 65 Antisense
CGCACATTGGCCTATATCGTCAGTC 145 255 76 Antisense
CACATTGGCCTATATCGTCAGTCGT 538 195 78 Antisense
TTGGCCTATATCGTCAGTCGTCGGC 643 703 82 Antisense
GCCTATATCGTCAGTCGTCGGCAGT 584 281 85 Antisense
Sequence Source Affymetrix Proprietary Database