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[172191_x_at]

Description C27C7.2 /REP_DB=WormBase Gene ID /WP=CE18533 /TR=Q9U3N9 /GB=CAB03928.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 20      4grp_total > 41      6grp_total_sub > Hat      6grp_rule_based > S2      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 394
1 2 3 4 range
A 3.9
(-3)
A 		188
(2.9)
P 		191
(3)
P 		112.4
(0.5)
M 		187
B 17.4
(-3)
A 		207
(0)
P 		396.3
(3)
P 		33
(-2.8)
A 		379
C 2
(-3)
A 		259.8
(3)
P 		195.6
(1.5)
P 		229.1
(2.3)
P 		258
avr 7.8
(-3) 		218.3
(2) 		261
(3) 		124.8
(-0.2) 		253

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 67
1 2 3 4 5 6 range
A 28.3
(0.6)
A 		34.3
(1.4)
A 		45.9
(3)
P 		38.4
(2)
A 		20
(-0.5)
A 		2.1
(-3)
A 		44
B 24.5
(-2.1)
A 		53.5
(3)
A 		22.8
(-2.4)
A 		20.1
(-2.9)
A 		23.8
(-2.2)
A 		19.4
(-3)
A 		34
C 26.3
(-0.7)
A 		68
(3)
P 		42.9
(0.8)
A 		38.5
(0.4)
A 		33.2
(-0.1)
A 		0.9
(-3)
A 		67
avr 26.4
(-0.4) 		51.9
(3) 		37.2
(1) 		32.3
(0.4) 		25.7
(-0.5) 		7.5
(-3) 		44
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 91
1 2 3 4 range
A 1.4
(-3)
A 		40.8
(1.9)
P 		49.9
(3)
P 		16.4
(-1.1)
M 		49
B 5.5
(-3)
A 		51.1
(0.2)
P 		91.8
(3)
P 		7
(-2.9)
A 		86
C 0.7
(-3)
A 		74.7
(3)
P 		68.2
(2.5)
P 		38.6
(0.1)
P 		74
avr 2.5
(-3) 		55.5
(1.7) 		70
(3) 		20.7
(-1.4) 		68

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 20
1 2 3 4 5 6 range
A 5.2
(-0.6)
A 		12.2
(3)
A 		10
(1.9)
P 		9.7
(1.7)
A 		6
(-0.2)
A 		0.5
(-3)
A 		12
B 8.5
(-1.5)
A 		17.8
(3)
A 		5.5
(-2.9)
A 		5.3
(-3)
A 		9.7
(-0.9)
A 		7.2
(-2.1)
A 		13
C 9.7
(-0.2)
A 		20.7
(3)
P 		10.9
(0.1)
A 		7.7
(-0.8)
A 		10.8
(0.1)
A 		0.3
(-3)
A 		20
avr 7.8
(-0.8) 		16.9
(3) 		8.8
(-0.4) 		7.6
(-0.9) 		8.8
(-0.4) 		2.7
(-3) 		14
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172191_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.541
Sequence Type Exemplar sequence
Representative Public ID C27C7.2 NCBI
Target Description C27C7.2 /REP_DB=WormBase Gene ID /WP=CE18533 /TR=Q9U3N9 /GB=CAB03928.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060519(11), NM_060526(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060519 NCBI Caenorhabditis elegans C27C7.2 (C27C7.2) mRNA, complete cds. 11/11 None
NM_060526 NCBI Caenorhabditis elegans ZK1025.4 (ZK1025.4) mRNA, complete cds. 10/11 A 
GENEFINDER00000039070 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:11441243:11443995:-1 10/11 None
GENEFINDER00000038829 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:11464629:11471339:-1 11/11 None
C27C7.2 ENSEMBL cdna:known chromosome:CEL140:I:11441243:11441544:-1 gene:C27C7.2 11/11 None
ZK1025.4 ENSEMBL cdna:known chromosome:CEL140:I:11464605:11468070:-1 gene:ZK1025.4 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_060696 7/11 Cross Hyb Matching Probes A 
GENEFINDER00000037790 6/11 Cross Hyb Matching Probes None
GENEFINDER00000037788 6/11 Cross Hyb Matching Probes None
F41D3.8 7/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:11441173-11441475(-) 100.0 100.0
chrI:11464559-11464861(-) 100.0 100.0
Public Domain and Genome References
Gene Title

Ensembl C27C7.2
ZK1025.4
Entrez Gene 182957 Entrez gene
191493 Entrez gene
SwissProt Q9U3N9 EMBL-EBI
WormBase CE18533 Wormbase
CE37173 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA18367 Hypothetical protein ZK1025.4 [Caenorhabditis elegans] ref|NP_492927.2| ZK1025.4 [Caenorhabditis elegans] 0.0
blast CAA18370 Hypothetical protein ZK1025.3 [Caenorhabditis elegans] ref|NP_492928.1| ZK1025.3 [Caenorhabditis elegans] 0.0
blast CAB03927 Hypothetical protein C27C7.4 [Caenorhabditis elegans] ref|NP_492921.1| Nuclear Hormone Receptor family member (nhr-73) [Caenorhabditis elegans] 1.0E-177
blast CAA18369 Hypothetical protein ZK1025.10 [Caenorhabditis elegans] ref|NP_492932.1| ZK1025.10 [Caenorhabditis elegans] 1.0E-177
blast CAA18365 Hypothetical protein ZK1025.7 [Caenorhabditis elegans] ref|NP_492929.1| ZK1025.7 [Caenorhabditis elegans] 1.0E-176
blast CAA18365 Hypothetical protein ZK1025.7 [Caenorhabditis elegans] ref|NP_492929.1| ZK1025.7 [Caenorhabditis elegans] 1.0E-160
blast CAE64183 Hypothetical protein CBG08809 [Caenorhabditis briggsae] 1.0E-111
Protein Domains
Database ID Description E-Value
Pfam IPR008166 EMBL-EBI Protein of unknown function DUF23 2.3E-9
Pfam IPR008166 EMBL-EBI Protein of unknown function DUF23 2.7E-103
Pfam IPR008166 EMBL-EBI Protein of unknown function DUF23 9.2E-9
Pfam IPR001628 EMBL-EBI Zn-finger, C4-type steroid receptor 4.4E-9
Pfam IPR002485 EMBL-EBI Protein of unknown function DUF13 2.6E-54
Pfam IPR008166 EMBL-EBI Protein of unknown function DUF23 1.8E-112
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000038829 1 76-93
Sequence
Target Sequence 
>C. ELEGANS:172191_X_AT
gatgcacaaaatcttcggagccaccccgccaatattttcctacactcccattctaaccat
gaacttatgcatagcaaaagcaacaccaaatgtgtgtcatagtaccggtaacctgtgcaa
agctgaaatggataatgtcactagttgggtttacgataa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATGCACAAAATCTTCGGAGCCACC 416 413 24 Antisense
TACACTCCCATTCTAACCATGAACT 673 641 64 Antisense
ACTCCCATTCTAACCATGAACTTAT 479 99 67 Antisense
CTAACCATGAACTTATGCATAGCAA 351 227 76 Antisense
AAAGCAACACCAAATGTGTGTCATA 105 123 100 Antisense
ATGTGTGTCATAGTACCGGTAACCT 163 49 113 Antisense
GTGTCATAGTACCGGTAACCTGTGC 647 485 117 Antisense
GTACCGGTAACCTGTGCAAAGCTGA 418 457 125 Antisense
GTAACCTGTGCAAAGCTGAAATGGA 671 461 131 Antisense
GAAATGGATAATGTCACTAGTTGGG 707 357 148 Antisense
ATGTCACTAGTTGGGTTTACGATAA 168 47 158 Antisense
Sequence Source Affymetrix Proprietary Database