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[172189_at]

Description F46A8.7 /REP_DB=WormBase Gene ID /WP=CE10570 /TR=O01333 /GB=CAB04393.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 66      6grp_high1_10_10 > 65      4grp_highest_8_8 > 54      4grp_high_8_8 > 10      6grp_highest_nonorm > 82      6grp_total > 66      4grp_total > 22      6grp_highest_sub > Da      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 678
1 2 3 4 range
A 701.3
(2.2)
P 		294.6
(-1.6)
P 		140.2
(-3)
P 		791.8
(3)
P 		652
B 724.7
(3)
P 		218.2
(-2.3)
P 		151.5
(-3)
P 		445
(0.1)
P 		573
C 561.7
(1.1)
P 		310.7
(-1.2)
P 		114.2
(-3)
P 		770.6
(3)
P 		656
avr 662.6
(2.9) 		274.5
(-1.4) 		135.3
(-3) 		669.1
(3) 		534

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 670
1 2 3 4 5 6 range
A 543.2
(3)
P 		103
(-3)
P 		484.4
(2.2)
P 		163.1
(-2.2)
P 		490.4
(2.3)
P 		171.3
(-2.1)
P 		440
B 454.9
(-0.1)
P 		312.2
(-2.6)
P 		554.2
(1.6)
P 		435.7
(-0.4)
P 		290.1
(-3)
P 		631.3
(3)
P 		341
C 45.4
(-3)
P 		360.5
(-0.2)
P 		220.9
(-1.4)
P 		256.2
(-1.1)
P 		190.3
(-1.7)
P 		715.1
(3)
P 		670
avr 347.8
(-0.8) 		258.6
(-3) 		419.8
(0.9) 		285
(-2.4) 		323.6
(-1.4) 		505.9
(3) 		247
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 220
1 2 3 4 range
A 255.3
(3)
P 		63.9
(-2.3)
P 		36.7
(-3)
P 		115.9
(-0.8)
P 		219
B 231.1
(3)
P 		53.9
(-2.4)
P 		35.1
(-3)
P 		94.8
(-1.2)
P 		196
C 185.9
(3)
P 		89.3
(-1)
P 		39.8
(-3)
P 		129.9
(0.7)
P 		146
avr 224.1
(3) 		69
(-2) 		37.2
(-3) 		113.5
(-0.6) 		187

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 223
1 2 3 4 5 6 range
A 100.1
(0.4)
P 		36.6
(-3)
P 		105.5
(0.7)
P 		41.4
(-2.7)
P 		148
(3)
P 		41.7
(-2.7)
P 		111
B 158.3
(-0.5)
P 		103.9
(-3)
P 		134.6
(-1.6)
P 		115.4
(-2.5)
P 		117.9
(-2.4)
P 		235.4
(3)
P 		132
C 16.8
(-3)
P 		110
(-0.5)
P 		56.2
(-1.9)
P 		51.5
(-2.1)
P 		61.6
(-1.8)
P 		239.4
(3)
P 		223
avr 91.7
(-1.7) 		83.5
(-2.2) 		98.8
(-1.3) 		69.4
(-3) 		109.2
(-0.7) 		172.2
(3) 		103
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 172189_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2368
Sequence Type Exemplar sequence
Representative Public ID F46A8.7 NCBI
Target Description F46A8.7 /REP_DB=WormBase Gene ID /WP=CE10570 /TR=O01333 /GB=CAB04393.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060481(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060481 NCBI Caenorhabditis elegans F46A8.7 (F46A8.7) mRNA, complete cds. 11/11 None
F46A8.7 ENSEMBL cdna:known chromosome:CEL140:I:11246241:11246351:-1 gene:F46A8.7 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:15043789-15043900(+) 97.3 97.3
chrII:15042693-15042804(+) 97.3 97.3
chrII:13600210-13600321(-) 98.2 98.2
chrI:11246171-11246282(-) 100.0 100.0
chrI:11245028-11245139(-) 100.0 100.0
chrI:10866130-10866241(-) 99.1 99.1
Public Domain and Genome References
Gene Title
Ensembl F46A8.7
Entrez Gene 185823 Entrez gene
SwissProt O01333 EMBL-EBI
WormBase CE10570 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04393 Hypothetical protein F46A8.7 [Caenorhabditis elegans] ref|NP_492882.1| F46A8.7 [Caenorhabditis elegans] 2.0E-14
Sequence
Target Sequence 
>C. ELEGANS:172189_AT
aaacactttgattgtgtgctaaagcatttattgagtcgttgctgtgccagacgacgagag
tcttcctttcgtccg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAACACTTTGATTGTGTGCTAAAGC 404 129 19 Antisense
GTGTGCTAAAGCATTTATTGAGTCG 668 487 32 Antisense
CATTTATTGAGTCGTTGCTGTGCCA 224 215 43 Antisense
TTTATTGAGTCGTTGCTGTGCCAGA 698 671 45 Antisense
TATTGAGTCGTTGCTGTGCCAGACG 349 665 47 Antisense
GAGTCGTTGCTGTGCCAGACGACGA 285 401 51 Antisense
GTTGCTGTGCCAGACGACGAGAGTC 525 439 56 Antisense
GTGCCAGACGACGAGAGTCTTCCTT 398 477 62 Antisense
GCCAGACGACGAGAGTCTTCCTTTC 155 279 64 Antisense
CAGACGACGAGAGTCTTCCTTTCGT 583 203 66 Antisense
ACGACGAGAGTCTTCCTTTCGTCCG 483 93 69 Antisense
Sequence Source Affymetrix Proprietary Database