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[172188_x_at]

Description M04C9.2 /REP_DB=WormBase Gene ID /WP=CE12402 /TR=P90931 /GB=CAB06020.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 54      4grp_total > 10      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 181
1 2 3 4 range
A 10.3
(-2.6)
A 		42.5
(-1)
A 		3.3
(-3)
A 		122.7
(3)
P 		119
B 27.1
(-0.9)
A 		13.8
(-3)
A 		19.2
(-2.2)
A 		52
(3)
P 		38
C 26
(-2.8)
A 		38.5
(-2.3)
A 		20.2
(-3)
A 		184
(3)
P 		164
avr 21.1
(-2.6) 		31.6
(-2) 		14.2
(-3) 		119.6
(3) 		105

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 42
1 2 3 4 5 6 range
A 3.4
(-3)
A 		4.9
(-2.8)
A 		41.8
(3)
P 		9.7
(-2)
A 		20.1
(-0.4)
A 		19.7
(-0.5)
A 		38
B 14.9
(-3)
P 		27.5
(1.5)
P 		31.7
(3)
A 		17.9
(-1.9)
A 		19.1
(-1.5)
A 		25.6
(0.8)
P 		17
C 42.9
(3)
A 		33.4
(1.6)
P 		41.3
(2.8)
A 		31.4
(1.3)
A 		1.1
(-3)
A 		16.5
(-0.8)
A 		42
avr 20.4
(-1.3) 		21.9
(-1) 		38.3
(3) 		19.7
(-1.5) 		13.4
(-3) 		20.6
(-1.3) 		25
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 30
1 2 3 4 range
A 3.8
(-2)
A 		9.2
(-0.1)
A 		0.9
(-3)
A 		18
(3)
P 		17
B 8.6
(1.1)
A 		3.4
(-3)
A 		4.4
(-2.2)
A 		11.1
(3)
P 		8
C 8.6
(-2.6)
A 		11.1
(-2)
A 		7
(-3)
A 		31
(3)
P 		24
avr 7
(-1.9) 		7.9
(-1.6) 		4.1
(-3) 		20
(3) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 0.6
(-3)
A 		1.8
(-2.2)
A 		9.1
(3)
P 		2.4
(-1.7)
A 		6.1
(0.9)
A 		4.8
(-0)
A 		9
B 5.2
(-2.4)
P 		9.2
(2.5)
P 		7.7
(0.7)
A 		4.7
(-3)
A 		7.8
(0.8)
A 		9.6
(3)
P 		5
C 15.9
(3)
A 		10.2
(0.8)
P 		10.5
(0.9)
A 		6.3
(-0.7)
A 		0.4
(-3)
A 		5.5
(-1)
A 		16
avr 7.2
(0.5) 		7.1
(0.4) 		9.1
(3) 		4.5
(-3) 		4.8
(-2.6) 		6.6
(-0.3) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172188_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1906
Sequence Type Exemplar sequence
Representative Public ID M04C9.2 NCBI
Target Description M04C9.2 /REP_DB=WormBase Gene ID /WP=CE12402 /TR=P90931 /GB=CAB06020.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060088(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060088 NCBI Caenorhabditis elegans M04C9.2 (M04C9.2) mRNA, complete cds. 11/11 None
SNAP00000035485 ENSEMBL cdna:SNAP chromosome:CEL140:I:9357283:9357681:-1 10/11 None
GENEFINDER00000035497 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:9357283:9357681:-1 9/11 None
M04C9.2 ENSEMBL cdna:known chromosome:CEL140:I:9357398:9357681:-1 gene:M04C9.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:9357328-9357612(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl M04C9.2
Entrez Gene 187439 Entrez gene
SwissProt P90931 EMBL-EBI
WormBase CE12402 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB06020 Hypothetical protein M04C9.2 [Caenorhabditis elegans] ref|NP_492489.1| M04C9.2 [Caenorhabditis elegans] 5.0E-29
blast CAB06020 Hypothetical protein M04C9.2 [Caenorhabditis elegans] ref|NP_492489.1| M04C9.2 [Caenorhabditis elegans] 2.0E-22
blast CAB06020 Hypothetical protein M04C9.2 [Caenorhabditis elegans] ref|NP_492489.1| M04C9.2 [Caenorhabditis elegans] 1.0E-19
Sequence
Target Sequence 
>C. ELEGANS:172188_X_AT
atgacaatgactccagtttccgatccaattccaattggaaatcaagaagataaggaaaac
atagaggatgcagaaaatacaatgaatatatcaccagcgtgtgataggattctagtggat
catcagtacaccagagatgttgtcatcacaggtaag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGACAATGACTCCAGTTTCCGATC 23 45 13 Antisense
TGACAATGACTCCAGTTTCCGATCC 685 571 14 Antisense
CAGTTTCCGATCCAATTCCAATTGG 429 195 26 Antisense
ACAATGAATATATCACCAGCGTGTG 386 113 91 Antisense
CACCAGCGTGTGATAGGATTCTAGT 123 203 104 Antisense
GATAGGATTCTAGTGGATCATCAGT 283 425 115 Antisense
GATTCTAGTGGATCATCAGTACACC 168 431 120 Antisense
AGTGGATCATCAGTACACCAGAGAT 71 59 126 Antisense
TCAGTACACCAGAGATGTTGTCATC 675 621 135 Antisense
ACACCAGAGATGTTGTCATCACAGG 601 107 140 Antisense
CAGAGATGTTGTCATCACAGGTAAG 383 205 144 Antisense
Sequence Source Affymetrix Proprietary Database