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[172187_x_at]

Description Y54G2A.F /REP_DB=WormBase Gene ID /WP=CE25448 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF59566.1
Cluster 6grp_total > 27      4grp_total > 06      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 156
1 2 3 4 range
A 59.6
(-1.6)
A 		30.5
(-3)
A 		34.1
(-2.8)
A 		151.1
(3)
A 		121
B 131.2
(2.5)
A 		29.3
(-3)
A 		121.9
(2)
A 		140.8
(3)
A 		112
C 102.9
(-0)
A 		25.5
(-3)
A 		44.3
(-2.3)
A 		181
(3)
A 		156
avr 97.9
(0.2) 		28.4
(-3) 		66.8
(-1.2) 		157.6
(3) 		129

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 288
1 2 3 4 5 6 range
A 15.2
(-3)
A 		179.9
(3)
A 		40.5
(-2.1)
A 		35.4
(-2.3)
A 		17.6
(-2.9)
A 		25.1
(-2.6)
A 		165
B 34
(-0.7)
A 		15.1
(-2.6)
A 		11.6
(-3)
A 		12.8
(-2.9)
A 		25.3
(-1.6)
A 		69.3
(3)
A 		58
C 299.2
(3)
A 		19
(-3)
A 		67.1
(-2)
A 		22.7
(-2.9)
A 		28.7
(-2.8)
A 		99.1
(-1.3)
A 		280
avr 116.1
(3) 		71.3
(0.1) 		39.7
(-2) 		23.6
(-3) 		23.9
(-3) 		64.5
(-0.3) 		93
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 35
1 2 3 4 range
A 21.7
(2.8)
A 		6.6
(-3)
A 		8.9
(-2.1)
A 		22.1
(3)
A 		16
B 41.8
(3)
A 		7.2
(-3)
A 		28.3
(0.7)
A 		30
(1)
A 		35
C 34.1
(3)
A 		7.3
(-3)
A 		15.4
(-1.2)
A 		30.5
(2.2)
A 		27
avr 32.5
(3) 		7
(-3) 		17.5
(-0.5) 		27.5
(1.8) 		26

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 108
1 2 3 4 5 6 range
A 2.8
(-3)
A 		64
(3)
A 		8.8
(-2.4)
A 		9
(-2.4)
A 		5.3
(-2.8)
A 		6.1
(-2.7)
A 		61
B 11.8
(-0.7)
A 		5
(-2.4)
A 		2.8
(-3)
A 		3.4
(-2.8)
A 		10.3
(-1)
A 		25.8
(3)
A 		23
C 110.9
(3)
A 		5.8
(-2.9)
A 		17.1
(-2.3)
A 		4.6
(-3)
A 		9.3
(-2.7)
A 		33.2
(-1.4)
A 		106
avr 41.8
(3) 		24.9
(0.2) 		9.6
(-2.4) 		5.7
(-3) 		8.3
(-2.6) 		21.7
(-0.3) 		36
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172187_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19285
Sequence Type Exemplar sequence
Representative Public ID Y54G2A.F NCBI
Target Description Y54G2A.F /REP_DB=WormBase Gene ID /WP=CE25448 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF59566.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001028328(11), NM_001028329(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001028328 NCBI Caenorhabditis elegans Y54G2A.26a (Y54G2A.26) mRNA, complete cds. 11/11 None
NM_001028329 NCBI Caenorhabditis elegans Y54G2A.26b (Y54G2A.26) mRNA, complete cds. 11/11 None
SNAP00000036518 ENSEMBL cdna:SNAP chromosome:CEL140:IV:2995243:2995469:-1 11/11 None
GENEFINDER00000036613 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:2986606:3011196:-1 11/11 None
Y54G2A.26a.1 ENSEMBL cdna:known chromosome:CEL140:IV:2986094:2995570:-1 gene:Y54G2A.26 11/11 None
Y54G2A.26a.2 ENSEMBL cdna:known chromosome:CEL140:IV:2986095:2995571:-1 gene:Y54G2A.26 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:2995248-2995475(-) 100.0 100.0
Public Domain and Genome References
Ensembl Y54G2A.26
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF59568 Hypothetical protein Y54G2A.26a [Caenorhabditis elegans] ref|NP_001023499.1| Y54G2A.26a [Caenorhabditis elegans] 0.0
blast AAP13744 Hypothetical protein Y54G2A.26b [Caenorhabditis elegans] ref|NP_001023500.1| Y54G2A.26b [Caenorhabditis elegans] 0.0
blast CAE59877 Hypothetical protein CBG03357 [Caenorhabditis briggsae] 0.0
Sequence
Target Sequence 
>C. ELEGANS:172187_X_AT
tccgaattttgctcagccctatggaatgggaatgcgcccacacgaggaagaaactcgaca
gattatgaatttggatagtcaacagacg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCCGAATTTTGCTCAGCCCTATGGA 552 593 66 Antisense
GAATTTTGCTCAGCCCTATGGAATG 90 325 69 Antisense
TTTGCTCAGCCCTATGGAATGGGAA 563 667 73 Antisense
AGCCCTATGGAATGGGAATGCGCCC 442 81 80 Antisense
TGGAATGGGAATGCGCCCACACGAG 673 545 87 Antisense
AATGGGAATGCGCCCACACGAGGAA 514 163 90 Antisense
GAATGCGCCCACACGAGGAAGAAAC 633 329 95 Antisense
ATGCGCCCACACGAGGAAGAAACTC 299 41 97 Antisense
GCCCACACGAGGAAGAAACTCGACA 143 287 101 Antisense
GAAACTCGACAGATTATGAATTTGG 400 357 115 Antisense
TATGAATTTGGATAGTCAACAGACG 674 651 129 Antisense
Sequence Source Affymetrix Proprietary Database