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[172186_x_at]

Description Y54G2A.Q /REP_DB=WormBase Gene ID /WP=CE25459 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF59577.1
Cluster 6grp_total > 66      4grp_total > 19      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 190
1 2 3 4 range
A 80.3
(-1.4)
A 		71.5
(-1.8)
A 		46.1
(-3)
A 		174.7
(3)
P 		129
B 85.7
(-3)
P 		110.5
(0.3)
A 		88.6
(-2.6)
A 		130.9
(3)
P 		45
C 63.3
(-3)
A 		101.2
(-1.7)
A 		62.1
(-3)
A 		236.1
(3)
P 		174
avr 76.4
(-2.4) 		94.4
(-1.5) 		65.6
(-3) 		180.6
(3) 		115

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 167
1 2 3 4 5 6 range
A 78.7
(-2.2)
A 		112.5
(-1)
P 		55.7
(-3)
A 		119.3
(-0.7)
P 		90.2
(-1.8)
P 		222.4
(3)
P 		167
B 74.8
(-3)
P 		78.7
(-2.8)
A 		101.1
(-1.6)
A 		97.7
(-1.8)
P 		96.2
(-1.8)
P 		185.3
(3)
P 		111
C 111.5
(0.1)
P 		125.2
(1.2)
P 		133.6
(1.8)
M 		109.5
(-0)
P 		70.8
(-3)
P 		149.1
(3)
P 		78
avr 88.3
(-2.8) 		105.5
(-1.8) 		96.8
(-2.3) 		108.8
(-1.6) 		85.7
(-3) 		185.6
(3) 		100
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 28
1 2 3 4 range
A 29.2
(3)
A 		15.5
(-1.8)
A 		12
(-3)
A 		25.6
(1.7)
P 		17
B 27.3
(2.5)
P 		27.3
(2.5)
A 		20.5
(-3)
A 		27.9
(3)
P 		7
C 21
(-3)
A 		29.1
(-0.4)
A 		21.6
(-2.8)
A 		39.8
(3)
P 		19
avr 25.8
(0.6) 		24
(-0.3) 		18
(-3) 		31.1
(3) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 57
1 2 3 4 5 6 range
A 14.5
(-2.7)
A 		40
(1)
P 		12.1
(-3)
A 		30.3
(-0.4)
P 		27.2
(-0.8)
P 		54.1
(3)
P 		42
B 26
(-2.8)
P 		26.2
(-2.8)
A 		24.5
(-3)
A 		25.9
(-2.8)
P 		39.1
(-1)
P 		69.1
(3)
P 		45
C 41.3
(1.2)
P 		38.2
(0.5)
P 		34
(-0.4)
M 		22
(-3)
P 		22.9
(-2.8)
P 		49.9
(3)
P 		28
avr 27.3
(-2.3) 		34.8
(-1) 		23.5
(-3) 		26.1
(-2.5) 		29.7
(-1.9) 		57.7
(3) 		34
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172186_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19279
Sequence Type Exemplar sequence
Representative Public ID Y54G2A.Q NCBI
Target Description Y54G2A.Q /REP_DB=WormBase Gene ID /WP=CE25459 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF59577.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074115(11), NM_067919(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074115 NCBI Caenorhabditis elegans T16A9.1 (T16A9.1) mRNA, complete cds. 11/11 A 
NM_067919 NCBI Caenorhabditis elegans Y55H10B.1 (Y55H10B.1) mRNA, complete cds. 9/11 A 
SNAP00000034693 ENSEMBL cdna:SNAP chromosome:CEL140:IV:3313613:3316753:1 9/11 None
GENEFINDER00000034695 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:3313595:3316753:1 9/11 None
SNAP00000036503 ENSEMBL cdna:SNAP chromosome:CEL140:IV:2904148:2908518:-1 11/11 None
GENEFINDER00000036619 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:2904148:2908518:-1 11/11 None
SNAP00000032387 ENSEMBL cdna:SNAP chromosome:CEL140:V:14204241:14206640:-1 11/11 None
GENEFINDER00000032394 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:14204241:14206640:-1 11/11 None
Y55H10B.1 ENSEMBL cdna:known chromosome:CEL140:IV:3314464:3317258:1 gene:Y55H10B.1 9/11 A 
T16A9.1 ENSEMBL cdna:known chromosome:CEL140:V:14204007:14206640:-1 gene:T16A9.1 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_061031 8/11 Cross Hyb Matching Probes A 
NM_075057 7/11 Cross Hyb Matching Probes A 
SNAP00000038367 8/11 Cross Hyb Matching Probes None
GENEFINDER00000038392 8/11 Cross Hyb Matching Probes None
SNAP00000009855 7/11 Cross Hyb Matching Probes None
GENEFINDER00000009867 6/11 Cross Hyb Matching Probes None
Y71A12B.7 8/11 Cross Hyb Matching Probes A 
F57G4.3 7/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:233628-237596(-) 48.12 48.12
chrIV:2909866-2914844(-) 51.62 51.9
Public Domain and Genome References
Gene Title

Ensembl Y55H10B.1
T16A9.1
Entrez Gene 177100 Entrez gene
179923 Entrez gene
SwissProt Q22520 EMBL-EBI
Q9N4R8 EMBL-EBI
WormBase CE13720 Wormbase
CE22571 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB00875 Hypothetical protein T16A9.1 [Caenorhabditis elegans] ref|NP_506516.1| T16A9.1 [Caenorhabditis elegans] 0.0
blast CAC14422 Hypothetical protein Y71A12B.7 [Caenorhabditis elegans] ref|NP_493432.1| Y71A12B.7 [Caenorhabditis elegans] 0.0
blast AAF60812 Hypothetical protein Y55H10B.1 [Caenorhabditis elegans] ref|NP_500320.1| Y55H10B.1 [Caenorhabditis elegans] 0.0
Sequence
Target Sequence 
>C. ELEGANS:172186_X_AT
acggccaagacgattccgctaactcaagaactacactcaccgagagcgaaaacgaagtga
attttgacaatgaaaccacttcgctgttctcgcctcaaagcacattcacgcctatttttt
cgtcaacgcgcctcgaagaaaggcaacttgtggaaagggagctcaaggacaaccatgccg
aagagattcaactcgacgctgacaaggccgacgagagccagctcaacgacagtcgaaggt
cggctagaaatcgtaccagttcaacaattttcgacccgtcgccaactcaaccaaacgatg
atttcgaaatgtctccgagccatagactattgcgttttgacgaaatcattgatctgtggg
atatcgaactgtacaccaatacgactgagagcctcaccttccgggccacactgggaactg
agaacaattattctgtcagacctgataccggaactgtgttgaaaagccgcatattgaaaa
ttcggctcctcaacgatgatgct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACGGCCAAGACGATTCCGCTAACTC 487 93 5213 Antisense
GCTAACTCAAGAACTACACTCACCG 92 303 5230 Antisense
ACAATGAAACCACTTCGCTGTTCTC 138 115 5279 Antisense
AAAGCACATTCACGCCTATTTTTTC 565 123 5309 Antisense
TTTTTCGTCAACGCGCCTCGAAGAA 636 609 5328 Antisense
GAGCTCAAGGACAACCATGCCGAAG 162 389 5371 Antisense
TCAACTCGACGCTGACAAGGCCGAC 373 627 5400 Antisense
GAGCCAGCTCAACGACAGTCGAAGG 322 385 5427 Antisense
CAGTTCAACAATTTTCGACCCGTCG 446 205 5469 Antisense
ACACCAATACGACTGAGAGCCTCAC 376 109 5585 Antisense
AATTCGGCTCCTCAACGATGATGCT 237 175 5691 Antisense
Sequence Source Affymetrix Proprietary Database