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[172185_x_at]

Description Y46C8AL.F /REP_DB=WormBase Gene ID /WP=CE25294 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF60600.1
Cluster 6grp_total > 74      4grp_total > 07      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 67
1 2 3 4 range
A 28.5
(0.7)
A 		3
(-3)
A 		44.8
(3)
A 		9.3
(-2.1)
A 		42
B 31.1
(0.9)
A 		7.7
(-3)
A 		44
(3)
A 		24.1
(-0.3)
A 		36
C 38.9
(-0.1)
P 		10.5
(-3)
A 		47.4
(0.7)
A 		69.6
(3)
P 		59
avr 32.8
(1) 		7.1
(-3) 		45.4
(3) 		34.3
(1.3) 		38

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 148
1 2 3 4 5 6 range
A 19.5
(-3)
A 		21.8
(-2.8)
A 		110
(3)
P 		85.3
(1.4)
P 		44
(-1.4)
A 		26.7
(-2.5)
A 		91
B 1.5
(-3)
A 		27.7
(-1.9)
A 		73.8
(-0.1)
P 		149.3
(3)
P 		47.7
(-1.1)
A 		83.7
(0.3)
P 		148
C 4.9
(-3)
A 		28.9
(-1.2)
A 		42.2
(-0.2)
P 		84.9
(3)
P 		17.6
(-2)
A 		63.9
(1.4)
P 		80
avr 8.6
(-3) 		26.1
(-1.9) 		75.3
(1.1) 		106.5
(3) 		36.4
(-1.3) 		58.1
(0) 		98
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 10.4
(2.3)
A 		0.6
(-3)
A 		11.7
(3)
A 		1.4
(-2.6)
A 		11
B 9.9
(2.8)
A 		1.9
(-3)
A 		10.2
(3)
A 		5.1
(-0.7)
A 		8
C 12.9
(1.4)
P 		3
(-3)
A 		16.5
(3)
A 		11.7
(0.9)
P 		14
avr 11.1
(2.1) 		1.8
(-3) 		12.8
(3) 		6.1
(-0.7) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 39
1 2 3 4 5 6 range
A 3.6
(-3)
A 		7.7
(-1.8)
A 		24
(3)
P 		21.6
(2.3)
P 		13.3
(-0.1)
A 		6.5
(-2.1)
A 		20
B 0.5
(-3)
A 		9.2
(-1.7)
A 		17.9
(-0.3)
P 		39.5
(3)
P 		19.4
(-0.1)
A 		31.2
(1.7)
P 		39
C 1.8
(-3)
A 		8.8
(-0.9)
A 		10.7
(-0.3)
P 		17.1
(1.7)
P 		5.7
(-1.8)
A 		21.4
(3)
P 		20
avr 2
(-3) 		8.6
(-1.4) 		17.5
(0.9) 		26.1
(3) 		12.8
(-0.3) 		19.7
(1.4) 		24
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172185_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19148
Sequence Type Exemplar sequence
Representative Public ID Y46C8AL.F NCBI
Target Description Y46C8AL.F /REP_DB=WormBase Gene ID /WP=CE25294 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF60600.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000030682 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:3940278:3941192:1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_068040 11/11 Negative Strand Matching Probes A 
SNAP00000030668 11/11 Negative Strand Matching Probes None
Y46C8AL.2 11/11 Negative Strand Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:3940283-3941198(+) 100.0 100.0
chrIV:3940493-3941162(+) 57.38 57.38
Functional Annotations
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000030682 10 20-41,53-75,80-102,107-129,133-155,167-189,194-216,221-243,247-269,276-298
Sequence
Target Sequence 
>C. ELEGANS:172185_X_AT
agtcggagtagtcggagtagttggagtagacttcatggtagtcggagtagtcggagtagt
tggagtagacttcatggtagtcggagtagtcggagtagttggtgtagacttcatggtagt
cggagtagtcggagtagttggagtagacttcatggtagtcggagtagtcggagtagactt
catggtagtcggagtagtcggagtagttggtgtagacttcatggtagtcggagtagtcgg
agtagttggagtagacttcatggtagtcggagtagtcggagtagttggagtagacttcat
ggtagtcggagtagtcggagtagttggtgtagacttcatggtagtcggagtagtcggagt
agttggtgtagacttcatggtagtcggagtagtcggagtagttggagtagacttcatggt
agtcggagtagtcggagtagttggagtagacttcatggtagtcggagtagtcggagtagt
tggagtagacttcatggtagtcggagtagtcggagtagacttgatggtagtcggagtagt
cggtgtagacttcattgtacttggc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGTCGGAGTAGTCGGAGTAGTTGGA 168 45 333 Antisense
GAGTAGTTGGTGTAGACTTCATGGT 70 393 425 Antisense
CATGGTAGTCGGAGTAGTCGGAGTA 305 207 513 Antisense
GGAGTAGTTGGTGTAGACTTCATGG 684 515 532 Antisense
ACTTCATGGTAGTCGGAGTAGTCGG 21 99 548 Antisense
CTTCATGGTAGTCGGAGTAGTCGGA 6 221 588 Antisense
GTCGGAGTAGTCGGAGTAGTTGGTG 154 471 637 Antisense
AGTCGGAGTAGTCGGAGTAGTTGGT 167 45 675 Antisense
GGTAGTCGGAGTAGTCGGAGTAGTT 508 503 789 Antisense
GATGGTAGTCGGAGTAGTCGGTGTA 175 401 855 Antisense
CGGTGTAGACTTCATTGTACTTGGC 523 239 873 Antisense
Sequence Source Affymetrix Proprietary Database