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[172184_x_at]

Description Y46C8AL.B /REP_DB=WormBase Gene ID /WP=CE25291 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF60597.1
Cluster 6grp_highest_10_10 > 38      6grp_high1_10_10 > 83      4grp_highest_8_8 > 26      4grp_high_8_8 > 57      6grp_highest_nonorm > 49      6grp_total > 74      4grp_total > 63      6grp_highest_sub > 04      6grp_high1_sub > 04      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4075
1 2 3 4 range
A 3594.1
(2.3)
P 		1548.1
(-0.8)
P 		4012.6
(3)
P 		152.7
(-3)
P 		3860
B 3862.9
(2.5)
P 		1603.5
(-0.8)
P 		4184.9
(3)
P 		109.5
(-3)
P 		4075
C 3702.1
(2.3)
P 		1443.7
(-1.1)
P 		4124
(3)
P 		245.6
(-3)
P 		3878
avr 3719.7
(2.4) 		1531.8
(-0.9) 		4107.2
(3) 		169.3
(-3) 		3938

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10496
1 2 3 4 5 6 range
A 1324.1
(-3)
P 		1693.8
(-2.8)
P 		5927.6
(-0.2)
P 		11061.4
(3)
P 		5726.9
(-0.3)
P 		7490.3
(0.8)
P 		9737
B 1382.4
(-3)
P 		1593.7
(-2.9)
P 		5388.6
(-0.7)
P 		11802.1
(3)
P 		4925.8
(-1)
P 		6581.5
(-0)
P 		10420
C 1305.8
(-3)
P 		1597.1
(-2.8)
P 		7179.6
(0.7)
P 		10887.5
(3)
P 		5202
(-0.6)
P 		7359.2
(0.8)
P 		9582
avr 1337.4
(-3) 		1628.2
(-2.8) 		6165.3
(-0.1) 		11250.3
(3) 		5284.9
(-0.6) 		7143.7
(0.5) 		9913
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1415
1 2 3 4 range
A 1308.6
(3)
P 		336.1
(-1.5)
P 		1049
(1.8)
P 		22.3
(-3)
P 		1286
B 1231.9
(3)
P 		396
(-1.1)
P 		969.7
(1.7)
P 		23.3
(-3)
P 		1209
C 1225.5
(2.1)
P 		415.1
(-1.4)
P 		1437.3
(3)
P 		41.4
(-3)
P 		1396
avr 1255.3
(3) 		382.4
(-1.3) 		1152
(2.5) 		29
(-3) 		1226

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2882
1 2 3 4 5 6 range
A 244.1
(-3)
P 		602.4
(-2.2)
P 		1290.9
(-0.5)
P 		2805.4
(3)
P 		1728.1
(0.5)
P 		1823.6
(0.7)
P 		2561
B 481
(-3)
P 		530.5
(-2.9)
P 		1308.5
(-1.1)
P 		3126
(3)
P 		2001.3
(0.4)
P 		2454.2
(1.5)
P 		2645
C 484
(-3)
P 		487.3
(-3)
P 		1827.3
(1.1)
P 		2189.5
(2.2)
P 		1683.3
(0.6)
P 		2463.6
(3)
P 		1980
avr 403
(-3) 		540.1
(-2.6) 		1475.6
(-0.2) 		2707
(3) 		1804.2
(0.6) 		2247.1
(1.8) 		2304
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172184_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19317
Sequence Type Exemplar sequence
Representative Public ID Y46C8AL.B NCBI
Target Description Y46C8AL.B /REP_DB=WormBase Gene ID /WP=CE25291 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF60597.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068040(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068040 NCBI Caenorhabditis elegans Y46C8AL.2 (Y46C8AL.2) mRNA, complete cds. 11/11 None
SNAP00000030668 ENSEMBL cdna:SNAP chromosome:CEL140:IV:3940253:3941582:-1 9/11 None
Y46C8AL.2 ENSEMBL cdna:known chromosome:CEL140:IV:3940146:3941582:-1 gene:Y46C8AL.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:3940151-3941588(-) 100.0 100.0
chrIV:3940477-3941162(-) 49.26 49.26
Public Domain and Genome References
Gene Title
Ensembl Y46C8AL.2
Entrez Gene 189943 Entrez gene
SwissProt Q9N3W8 EMBL-EBI
WormBase CE25291 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF60597 Hypothetical protein Y46C8AL.2 [Caenorhabditis elegans] ref|NP_500441.1| Y46C8AL.2 [Caenorhabditis elegans] 0.0
blast AAF60603 Hypothetical protein Y46C8AL.6 [Caenorhabditis elegans] ref|NP_500443.2| Y46C8AL.6 [Caenorhabditis elegans] 6.0E-38
blast NP_001023474 Y46C8AL.9a [Caenorhabditis elegans] 1.0E-37
blast NP_001023475 Y46C8AL.9b [Caenorhabditis elegans] 1.0E-37
blast AAS21391 hypothetical protein 003-32 [Oikopleura dioica] 5.0E-25
blast CAE67847 Hypothetical protein CBG13434 [Caenorhabditis briggsae] 2.0E-21
Sequence
Target Sequence 
>C. ELEGANS:172184_X_AT
actaccatgaagtctactccaactactccgactactccgactaccatgaagtctacacca
actactccgactactccgactaccatgaagtctactccaactactccgactactccgact
accatgaagtctactccaactactccgactactccgactaccatgaagtctactccaact
actccgactactccgactaccatgaagtctacaccaactactccgactactccgactacc
atgaagtctactccaactactccgactactccgactaccatgaagtctactccaactact
ccgactactccgactaccatgaagtctactccgactactccgactaccatgaagtctact
ccaactactccgactactccgactaccatgaagtctacaccgactactccgactaccatg
aagtctacaccgactactccgtctaccatgaagtcttctccaactactccgactaccatg
aagacttcaagtatcacaaattaaaaatactttccatcattctaatatcaataaatgagt
tatttgtctgttaccatgaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACTACCATGAAGTCTACTCCAACTA 362 101 482 Antisense
CCATGAAGTCTACTCCAACTACTCC 318 269 603 Antisense
ACCATGAAGTCTACTCCAACTACTC 332 87 641 Antisense
TGAAGTCTACACCAACTACTCCGAC 676 573 684 Antisense
TACCATGAAGTCTACTCCAACTACT 361 649 757 Antisense
CCATGAAGTCTACTCCGACTACTCC 317 269 798 Antisense
ATGAAGTCTACACCGACTACTCCGA 608 43 869 Antisense
GTCTACCATGAAGTCTTCTCCAACT 337 469 922 Antisense
AACTACTCCGACTACCATGAAGACT 79 141 943 Antisense
AATACTTTCCATCATTCTAATATCA 459 171 987 Antisense
TGAGTTATTTGTCTGTTACCATGAA 489 567 1017 Antisense
Sequence Source Affymetrix Proprietary Database