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[172183_at]

Description Y51H7BL.A /REP_DB=WormBase Gene ID /WP=CE22351 /CHR=2 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF59498.1
Cluster 6grp_total > 50      4grp_total > 35      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4
1 2 3 4 range
A 2.1
(-3)
A 		2.9
(3)
A 		2.3
(-1.5)
A 		2.8
(2.3)
A 		1
B 3.2
(3)
A 		2.7
(0.7)
A 		2.2
(-1.6)
A 		1.9
(-3)
A 		1
C 1.5
(-3)
A 		5.2
(3)
A 		1.5
(-3)
A 		4.8
(2.4)
A 		4
avr 2.3
(-1.9) 		3.6
(3) 		2
(-3) 		3.2
(1.5) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3
1 2 3 4 5 6 range
A 2.6
(2)
A 		1.8
(-2)
A 		2.8
(3)
A 		1.6
(-3)
A 		2.3
(0.5)
A 		2.5
(1.5)
A 		1
B 1.5
(-1.4)
A 		2.2
(0.4)
A 		2.4
(0.9)
A 		3.2
(3)
A 		1.1
(-2.5)
A 		0.9
(-3)
A 		2
C 2
(-1.1)
A 		2.6
(0.1)
A 		1.7
(-1.8)
A 		4
(3)
A 		1.1
(-3)
A 		1.8
(-1.6)
A 		3
avr 2
(-0.9) 		2.2
(0) 		2.3
(0.4) 		2.9
(3) 		1.5
(-3) 		1.7
(-2.1) 		1
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1
1 2 3 4 range
A 0.7
(3)
A 		0.6
(1)
A 		0.6
(1)
A 		0.4
(-3)
A 		0
B 1
(3)
A 		0.7
(-0)
A 		0.5
(-2)
A 		0.4
(-3)
A 		1
C 0.5
(-3)
A 		1.5
(3)
A 		0.5
(-3)
A 		0.8
(-1.2)
A 		1
avr 0.7
(-0) 		0.9
(3) 		0.5
(-3) 		0.5
(-3) 		0

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1
1 2 3 4 5 6 range
A 0.5
(-1)
A 		0.6
(1)
A 		0.6
(1)
A 		0.4
(-3)
A 		0.7
(3)
A 		0.6
(1)
A 		0
B 0.5
(-1)
A 		0.7
(1)
A 		0.6
(-0)
A 		0.9
(3)
A 		0.4
(-2)
A 		0.3
(-3)
A 		1
C 0.7
(1.5)
A 		0.8
(3)
A 		0.4
(-3)
A 		0.8
(3)
A 		0.4
(-3)
A 		0.6
(-0)
A 		0
avr 0.6
(0) 		0.7
(3) 		0.5
(-3) 		0.7
(3) 		0.5
(-3) 		0.5
(-3) 		0
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 172183_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18891
Sequence Type Exemplar sequence
Representative Public ID Y51H7BL.A NCBI
Target Description Y51H7BL.A /REP_DB=WormBase Gene ID /WP=CE22351 /CHR=2 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF59498.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) Y51H7BL.A
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
Y51H7BL.A Y51H7BL.A /REP_DB=WormBase Gene ID /WP=CE22351 /CHR=2 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF59498.1 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_061580 11/11 Negative Strand Matching Probes A 
NM_061581 11/11 Negative Strand Matching Probes A 
H17B01.1a 11/11 Negative Strand Matching Probes None
H17B01.1b 11/11 Negative Strand Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:1508751-1508874(-) 100.0 100.0
Sequence
Target Sequence 
>C. ELEGANS:172183_AT
tttccacgagccgacgagtcgaagatttcggagacgaagaaccatggaatggctccgggt
ccggtggcaaaggagatgacg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTCCACGAGCCGACGAGTCGAAGA 667 663 25 Antisense
TCCACGAGCCGACGAGTCGAAGATT 268 589 27 Antisense
ACGAGCCGACGAGTCGAAGATTTCG 425 93 30 Antisense
GAGCCGACGAGTCGAAGATTTCGGA 19 387 32 Antisense
GACGAGTCGAAGATTTCGGAGACGA 524 379 37 Antisense
GAGTCGAAGATTTCGGAGACGAAGA 320 399 40 Antisense
GATTTCGGAGACGAAGAACCATGGA 292 427 48 Antisense
AGAACCATGGAATGGCTCCGGGTCC 323 73 62 Antisense
GCTCCGGGTCCGGTGGCAAAGGAGA 49 287 76 Antisense
TCCGGGTCCGGTGGCAAAGGAGATG 404 591 78 Antisense
GGGTCCGGTGGCAAAGGAGATGACG 385 493 81 Antisense
Sequence Source Affymetrix Proprietary Database