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[172182_x_at]

Description Y48G1BL.A /REP_DB=WormBase Gene ID /WP=CE25318 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF60687.1
Cluster 6grp_total > 88      4grp_total > 56      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 33
1 2 3 4 range
A 5.9
(-2.6)
A 		6.9
(-2.2)
A 		18.8
(3)
A 		5.1
(-3)
A 		14
B 8.9
(3)
A 		7.3
(1.5)
A 		2.5
(-3)
A 		3.7
(-1.9)
A 		6
C 7.3
(-3)
A 		16.2
(-1.1)
A 		35.4
(3)
A 		11.1
(-2.2)
A 		28
avr 7.4
(-2.6) 		10.1
(-1.3) 		18.9
(3) 		6.6
(-3) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 83
1 2 3 4 5 6 range
A 4.2
(-3)
A 		27.9
(0)
A 		30.8
(0.4)
A 		51.2
(3)
A 		44.4
(2.1)
A 		33.8
(0.8)
A 		47
B 34.4
(-1.2)
A 		22.7
(-2.1)
A 		12.1
(-3)
A 		12.4
(-3)
A 		42.2
(-0.5)
A 		85.6
(3)
A 		74
C 4.3
(-2.9)
A 		7.7
(-2.6)
A 		11.2
(-2.3)
A 		2.9
(-3)
A 		35.2
(-0.1)
A 		69.6
(3)
A 		67
avr 14.3
(-3) 		19.4
(-2.4) 		18
(-2.5) 		22.2
(-2) 		40.6
(0.2) 		63
(3) 		49
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 2.1
(-1.1)
A 		1.5
(-2)
A 		4.9
(3)
A 		0.8
(-3)
A 		4
B 2.8
(3)
A 		1.8
(0.3)
A 		0.6
(-3)
A 		0.8
(-2.5)
A 		2
C 2.4
(-2.7)
A 		4.7
(-1.4)
A 		12.3
(3)
A 		1.9
(-3)
A 		10
avr 2.4
(-1.5) 		2.7
(-1.1) 		5.9
(3) 		1.2
(-3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 31
1 2 3 4 5 6 range
A 0.8
(-3)
A 		9.9
(1.3)
A 		6.7
(-0.2)
A 		13
(2.8)
A 		13.4
(3)
A 		8.2
(0.5)
A 		13
B 12
(-1.1)
A 		7.6
(-2)
A 		2.9
(-3)
A 		3.3
(-2.9)
A 		17.1
(-0.1)
A 		31.9
(3)
A 		29
C 1.6
(-2.7)
A 		2.3
(-2.6)
A 		2.9
(-2.4)
A 		0.6
(-3)
A 		11.4
(-0.1)
A 		23.3
(3)
A 		23
avr 4.8
(-2.8) 		6.6
(-2.1) 		4.2
(-3) 		5.6
(-2.5) 		14
(0.5) 		21.1
(3) 		17
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172182_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18850
Sequence Type Exemplar sequence
Representative Public ID Y48G1BL.A NCBI
Target Description Y48G1BL.A /REP_DB=WormBase Gene ID /WP=CE25318 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF60687.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058297(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058297 NCBI Caenorhabditis elegans Y48G1BL.6 (Y48G1BL.6) mRNA, complete cds. 11/11 None
Y48G1BL.6 ENSEMBL cdna:known chromosome:CEL140:I:221249:221574:-1 gene:Y48G1BL.6 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_064372 2/11 Cross Hyb Matching Probes A 
NM_068419 3/11 Cross Hyb Matching Probes A 
NM_058304 3/11 Cross Hyb Matching Probes A 
SNAP00000016208 1/11 Cross Hyb Matching Probes None
GENEFINDER00000016213 1/11 Cross Hyb Matching Probes None
SNAP00000016209 8/11 Cross Hyb Matching Probes None
GENEFINDER00000016217 3/11 Cross Hyb Matching Probes None
SNAP00000014672 1/11 Cross Hyb Matching Probes None
GENEFINDER00000014673 3/11 Cross Hyb Matching Probes None
SNAP00000029956 2/11 Cross Hyb Matching Probes None
GENEFINDER00000029959 2/11 Cross Hyb Matching Probes None
SNAP00000012461 3/11 Cross Hyb Matching Probes None
GENEFINDER00000012469 3/11 Cross Hyb Matching Probes None
Y48G1BM.8 3/11 Cross Hyb Matching Probes A 
F18A11.1 2/11 Cross Hyb Matching Probes A 
B0273.2 3/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:221248-221574(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y48G1BL.6
Entrez Gene 190034 Entrez gene
SwissProt Q9N3P7 EMBL-EBI
WormBase CE25318 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_490698 Y48G1BL.6 [Caenorhabditis elegans] gb|AAF60687.1| Hypothetical protein Y48G1BL.6 [Caenorhabditis elegans] 4.0E-25
blast AAB88353 Puf (pumilio/fbf) domain-containing protein 7 [Caenorhabditis elegans] ref|NP_500820.1| PUF (Pumilio/FBF) domain-containing family member (puf-7) [Caenorhabditis elegans] 1.0E-13
blast CAB04133 Hypothetical protein F18A11.1 [Caenorhabditis elegans] ref|NP_496773.1| PUF (Pumilio/FBF) domain-containing family member (puf-6) [Caenorhabditis elegans] 1.0E-13
Sequence
Target Sequence 
>C. ELEGANS:172182_X_AT
cccatgttcggcgtttcattcgatttcgacccggatttttcgcttttgtcgaacaaaact
cacaagagcaggaacccaaagccgccggtcaagcttcttccctaccgccacgggagcaac
accacctcctccgactctgacagctacacttcggatctggatcttccgacgatgagactg
caccaccagtggctccgatcaccatctcgctccaagatgtgctgctcaacgggcagctca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCCATGTTCGGCGTTTCATTCGATT 540 257 19 Antisense
TCGGCGTTTCATTCGATTTCGACCC 268 605 26 Antisense
TCGATTTCGACCCGGATTTTTCGCT 173 603 38 Antisense
ACAAGAGCAGGAACCCAAAGCCGCC 181 113 80 Antisense
TCCGACTCTGACAGCTACACTTCGG 703 593 148 Antisense
CTCTGACAGCTACACTTCGGATCTG 703 231 153 Antisense
GCTACACTTCGGATCTGGATCTTCC 178 303 161 Antisense
GGATCTTCCGACGATGAGACTGCAC 499 511 177 Antisense
CACCATCTCGCTCCAAGATGTGCTG 606 201 218 Antisense
GCTCCAAGATGTGCTGCTCAACGGG 317 297 227 Antisense
GATGTGCTGCTCAACGGGCAGCTCA 502 407 234 Antisense
Sequence Source Affymetrix Proprietary Database