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[172181_x_at]

Description Y48G1BL.C /REP_DB=WormBase Gene ID /WP=CE22180 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF60689.1
Cluster 6grp_total > 65      4grp_total > 40      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 53
1 2 3 4 range
A 27.8
(-1)
A 		25
(-1.4)
A 		57.6
(3)
A 		13.2
(-3)
A 		44
B 24.6
(-3)
A 		56.3
(2.1)
A 		27.1
(-2.6)
A 		62.1
(3)
A 		38
C 41.8
(2.5)
A 		8.8
(-3)
A 		44.5
(3)
A 		29.6
(0.5)
A 		36
avr 31.4
(-2.4) 		30
(-3) 		43.1
(3) 		35
(-0.7) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 75
1 2 3 4 5 6 range
A 13.5
(-2.2)
A 		37.2
(-0.3)
A 		56.2
(1.2)
A 		78.4
(3)
A 		3.9
(-3)
A 		66
(2)
A 		75
B 46.8
(1.1)
A 		37.3
(-0)
A 		40.1
(0.3)
A 		11.3
(-3)
A 		49.4
(1.4)
A 		63.3
(3)
A 		52
C 17.6
(-3)
A 		24.2
(-2.2)
A 		45.4
(0.3)
A 		35.3
(-0.9)
A 		48.4
(0.6)
A 		68.6
(3)
A 		51
avr 26
(-3) 		32.9
(-2) 		47.2
(0.2) 		41.7
(-0.6) 		33.9
(-1.8) 		66
(3) 		40
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 10.1
(0.7)
A 		5.4
(-1.4)
A 		15.1
(3)
A 		1.9
(-3)
A 		13
B 7.8
(-1.8)
A 		13.9
(3)
A 		6.3
(-3)
A 		13.2
(2.4)
A 		8
C 13.8
(2.2)
A 		2.5
(-3)
A 		15.5
(3)
A 		5
(-1.8)
A 		13
avr 10.6
(1.2) 		7.3
(-2.4) 		12.3
(3) 		6.7
(-3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 22
1 2 3 4 5 6 range
A 2.5
(-2.6)
A 		13.2
(0.9)
A 		12.2
(0.5)
A 		19.9
(3)
A 		1.2
(-3)
A 		16.1
(1.8)
A 		19
B 16.3
(0.9)
A 		12.4
(-0.3)
A 		9.7
(-1)
A 		3
(-3)
A 		20.1
(2)
A 		23.6
(3)
A 		21
C 6.5
(-3)
A 		7.4
(-2.7)
A 		11.6
(-1.1)
A 		7.1
(-2.8)
A 		15.7
(0.3)
A 		23
(3)
A 		17
avr 8.4
(-3) 		11
(-1.8) 		11.2
(-1.7) 		10
(-2.2) 		12.3
(-1.1) 		20.9
(3) 		13
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172181_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18843
Sequence Type Exemplar sequence
Representative Public ID Y48G1BL.C NCBI
Target Description Y48G1BL.C /REP_DB=WormBase Gene ID /WP=CE22180 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF60689.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058295(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058295 NCBI Caenorhabditis elegans Y48G1BL.4 (Y48G1BL.4) mRNA, complete cds. 11/11 None
GENEFINDER00000016218 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:217148:217431:-1 11/11 None
Y48G1BL.4 ENSEMBL cdna:known chromosome:CEL140:I:217148:217431:-1 gene:Y48G1BL.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_059327 1/11 Cross Hyb Matching Probes A 
NM_062113 1/11 Cross Hyb Matching Probes A 
NM_059325 1/11 Cross Hyb Matching Probes A 
GENEFINDER00000037998 1/11 Cross Hyb Matching Probes None
SNAP00000016209 2/11 Cross Hyb Matching Probes None
GENEFINDER00000012795 1/11 Cross Hyb Matching Probes None
SNAP00000037066 1/11 Cross Hyb Matching Probes None
SNAP00000037070 1/11 Cross Hyb Matching Probes None
GENEFINDER00000037079 1/11 Cross Hyb Matching Probes None
GENEFINDER00000037080 1/11 Cross Hyb Matching Probes None
Y76G2A.1 1/11 Cross Hyb Matching Probes A 
C06A5.5 1/11 Cross Hyb Matching Probes A 
F14D2.10 1/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Public Domain and Genome References
Gene Title
Ensembl Y48G1BL.4
Entrez Gene 190032 Entrez gene
SwissProt Q9N3P9 EMBL-EBI
WormBase CE22180 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_490696 Y48G1BL.4 [Caenorhabditis elegans] gb|AAF60689.1| Hypothetical protein Y48G1BL.4 [Caenorhabditis elegans] 3.0E-41
blast NP_494514 F14D2.10 [Caenorhabditis elegans] 8.0E-30
blast AAC78488 Hypothetical protein Y76G2A.1 [Caenorhabditis elegans] gb|AAB52444.1| Hypothetical protein C06A5.5 [Caenorhabditis elegans] ref|NP_491728.1| C06A5.5 [Caenorhabditis elegans] ref|NP_491726.1| Y76G2A.1 [Caenorhabditis elegans] 8.0E-22
Sequence
Target Sequence 
>C. ELEGANS:172181_X_AT
tctacatcggtcgtttcccaaatagagcatccgatcgtgatgccgagcacttcttctgcg
attatggaaagctgccggatgccataatgaagaacgtatttggtgttggttgtaaggatt
ttcaagatcagagcgatgctgatgacatcatttgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCTACATCGGTCGTTTCCCAAATAG 115 611 23 Antisense
GTTTCCCAAATAGAGCATCCGATCG 391 451 35 Antisense
CATCCGATCGTGATGCCGAGCACTT 526 211 50 Antisense
AGCACTTCTTCTGCGATTATGGAAA 339 77 68 Antisense
GCGATTATGGAAAGCTGCCGGATGC 130 291 80 Antisense
ATGGAAAGCTGCCGGATGCCATAAT 521 51 86 Antisense
GCTGCCGGATGCCATAATGAAGAAC 19 299 93 Antisense
GAAGAACGTATTTGGTGTTGGTTGT 664 335 111 Antisense
TTGGTGTTGGTTGTAAGGATTTTCA 245 693 122 Antisense
GGATTTTCAAGATCAGAGCGATGCT 613 507 138 Antisense
GAGCGATGCTGATGACATCATTTGT 679 385 153 Antisense
Sequence Source Affymetrix Proprietary Database