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[172179_x_at]

Description Y45G5AM.C /REP_DB=WormBase Gene ID /WP=CE26400 /CHR=5 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAG23360.1
Cluster 6grp_total > 90      4grp_total > 19      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 53
1 2 3 4 range
A 2.9
(-3)
A 		29
(0.4)
A 		4
(-2.9)
A 		48.7
(3)
A 		46
B 15.9
(3)
A 		10.6
(0.7)
A 		2.1
(-3)
A 		5.1
(-1.7)
A 		14
C 2.9
(-2.9)
A 		4.4
(-2.7)
A 		1.7
(-3)
A 		54.6
(3)
M 		53
avr 7.2
(-2.2) 		14.7
(-0.8) 		2.6
(-3) 		36.1
(3) 		34

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 8
1 2 3 4 5 6 range
A 6.1
(1.7)
A 		2.5
(-1.8)
A 		1.3
(-3)
A 		7.4
(3)
A 		4.3
(-0)
A 		4.3
(-0)
A 		6
B 1.2
(-3)
A 		4.9
(3)
A 		1.6
(-2.4)
A 		4.1
(1.7)
A 		1.2
(-3)
A 		1.6
(-2.4)
A 		4
C 3.5
(-1.4)
A 		9.6
(3)
A 		2.1
(-2.4)
A 		7.3
(1.4)
A 		3.5
(-1.4)
A 		1.2
(-3)
A 		8
avr 3.6
(-0.5) 		5.7
(2.2) 		1.7
(-3) 		6.3
(3) 		3
(-1.3) 		2.4
(-2.1) 		5
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 1.1
(-2.9)
A 		6.3
(2.2)
A 		1
(-3)
A 		7.1
(3)
A 		6
B 5.1
(3)
A 		2.6
(-0.3)
A 		0.5
(-3)
A 		1.1
(-2.2)
A 		5
C 0.9
(-2.8)
A 		1.3
(-2.5)
A 		0.6
(-3)
A 		9.2
(3)
M 		9
avr 2.4
(-1) 		3.4
(0.2) 		0.7
(-3) 		5.8
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3
1 2 3 4 5 6 range
A 1.1
(0)
A 		0.9
(-0.8)
A 		0.3
(-3)
A 		1.9
(3)
A 		1.3
(0.8)
A 		1
(-0.4)
A 		2
B 0.4
(-3)
A 		1.6
(3)
A 		0.4
(-3)
A 		1.1
(0.5)
A 		0.5
(-2.5)
A 		0.6
(-2)
A 		1
C 1.3
(-0.8)
A 		2.9
(3)
A 		0.5
(-2.8)
A 		1.5
(-0.4)
A 		1.1
(-1.3)
A 		0.4
(-3)
A 		3
avr 0.9
(-0.9) 		1.8
(3) 		0.4
(-3) 		1.5
(1.7) 		1
(-0.4) 		0.7
(-1.7) 		1
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172179_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19477
Sequence Type Exemplar sequence
Representative Public ID Y45G5AM.C NCBI
Target Description Y45G5AM.C /REP_DB=WormBase Gene ID /WP=CE26400 /CHR=5 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAG23360.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) Y45G5AM.C
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
Y45G5AM.C Y45G5AM.C /REP_DB=WormBase Gene ID /WP=CE26400 /CHR=5 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAG23360.1 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000035239 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:4162012-4162265(-) 100.0 100.0
Sequence
Target Sequence 
>C. ELEGANS:172179_X_AT
ctcccactcacaatccatcggattggttaaaaagtgggcggagcgaatcggtgattggtc
ttgcagttttcattttggagggaatccaaaaagggagattagcaagagttggaaaatcgc
gagaaaaaagtttgctcca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTCCCACTCACAATCCATCGGATTG 40 235 24 Antisense
CATCGGATTGGTTAAAAAGTGGGCG 345 197 39 Antisense
AAAGTGGGCGGAGCGAATCGGTGAT 354 121 54 Antisense
GGAGCGAATCGGTGATTGGTCTTGC 354 521 63 Antisense
GAATCGGTGATTGGTCTTGCAGTTT 504 329 68 Antisense
GGTGATTGGTCTTGCAGTTTTCATT 92 501 73 Antisense
ATTGGTCTTGCAGTTTTCATTTTGG 127 5 77 Antisense
GCAGTTTTCATTTTGGAGGGAATCC 216 311 86 Antisense
AAAAGGGAGATTAGCAAGAGTTGGA 288 113 112 Antisense
GCAAGAGTTGGAAAATCGCGAGAAA 636 319 125 Antisense
AATCGCGAGAAAAAAGTTTGCTCCA 92 167 138 Antisense
Sequence Source Affymetrix Proprietary Database