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[172178_at]

Description Y53G8AM.I /REP_DB=WormBase Gene ID /WP=CE25417 /CHR=3 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF59538.1
Cluster 6grp_total > 02      4grp_total > 12      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 59
1 2 3 4 range
A 41.7
(0.3)
A 		13.2
(-3)
A 		23.3
(-1.8)
A 		65
(3)
A 		52
B 8.9
(-3)
A 		9.4
(-2.9)
A 		17.1
(-2.2)
A 		67.9
(3)
A 		59
C 36.1
(1.8)
A 		42.6
(3)
A 		8.9
(-3)
A 		14.4
(-2)
A 		34
avr 28.9
(-0.7) 		21.7
(-2) 		16.4
(-3) 		49.1
(3) 		33

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 43
1 2 3 4 5 6 range
A 25.9
(1.1)
A 		35.3
(3)
A 		16.4
(-0.9)
A 		32.2
(2.4)
A 		6.3
(-3)
A 		23.8
(0.6)
A 		29
B 31.2
(2.8)
A 		32.1
(3)
A 		21.6
(0.9)
A 		17.3
(-0)
A 		19.3
(0.4)
A 		2.7
(-3)
A 		29
C 7.3
(-2.7)
A 		45.4
(3)
A 		10.6
(-2.2)
A 		9.1
(-2.4)
A 		5.2
(-3)
A 		14.6
(-1.6)
A 		40
avr 21.5
(-0.5) 		37.6
(3) 		16.2
(-1.7) 		19.5
(-1) 		10.3
(-3) 		13.7
(-2.3) 		27
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 15.2
(3)
A 		2.9
(-3)
A 		6.1
(-1.4)
A 		9.5
(0.2)
A 		12
B 2.8
(-2.8)
A 		2.3
(-3)
A 		4
(-2.2)
A 		14.5
(3)
A 		12
C 12
(2.9)
A 		12.2
(3)
A 		3.1
(-2.6)
A 		2.4
(-3)
A 		10
avr 10
(3) 		5.8
(-1.5) 		4.4
(-3) 		8.8
(1.7) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 4.8
(-1.4)
A 		12.6
(3)
A 		3.6
(-2)
A 		8.2
(0.5)
A 		1.9
(-3)
A 		5.8
(-0.8)
A 		11
B 10.9
(3)
A 		10.7
(2.9)
A 		5.3
(-0.4)
A 		4.6
(-0.8)
A 		7.9
(1.2)
A 		1
(-3)
A 		10
C 2.7
(-2.5)
A 		13.8
(3)
A 		2.7
(-2.5)
A 		1.8
(-3)
A 		1.7
(-3)
A 		4.9
(-1.4)
A 		12
avr 6.1
(-1.4) 		12.4
(3) 		3.9
(-2.9) 		4.9
(-2.2) 		3.8
(-3) 		3.9
(-2.9) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 172178_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18972
Sequence Type Exemplar sequence
Representative Public ID Y53G8AM.I NCBI
Target Description Y53G8AM.I /REP_DB=WormBase Gene ID /WP=CE25417 /CHR=3 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF59538.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065282(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065282 NCBI Caenorhabditis elegans Y53G8AM.2 (Y53G8AM.2) mRNA, complete cds. 11/11 None
Y53G8AM.2 ENSEMBL cdna:known chromosome:CEL140:III:3271811:3272032:1 gene:Y53G8AM.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:3271810-3272032(+) 59.91 100.0
Public Domain and Genome References
Gene Title
Ensembl Y53G8AM.2
Entrez Gene 190234 Entrez gene
SwissProt Q9N3G6 EMBL-EBI
WormBase CE25417 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK29929 Hypothetical protein Y53G8AM.2 [Caenorhabditis elegans] ref|NP_497683.1| Y53G8AM.2 [Caenorhabditis elegans] 2.0E-15
Sequence
Target Sequence 
>C. ELEGANS:172178_AT
tctctctttctcttctgtatagagggacacagagagagtttctccttcttcccttcacat
gatgatggttgggccgaaccgaccgcacgctcagagggaaagagagagagagagagagag
agagagagagagagagagagaggggagagggggcctaccg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCTCTCTTTCTCTTCTGTATAGAGG 167 613 40 Antisense
CTCTTTCTCTTCTGTATAGAGGGAC 84 229 43 Antisense
TTCTCTTCTGTATAGAGGGACACAG 679 687 47 Antisense
GGGACACAGAGAGAGTTTCTCCTTC 268 495 63 Antisense
ACAGAGAGAGTTTCTCCTTCTTCCC 573 105 68 Antisense
TTCTTCCCTTCACATGATGATGGTT 265 689 85 Antisense
TTCCCTTCACATGATGATGGTTGGG 3 697 88 Antisense
GATGATGGTTGGGCCGAACCGACCG 331 411 100 Antisense
CGACCGCACGCTCAGAGGGAAAGAG 470 251 119 Antisense
ACCGCACGCTCAGAGGGAAAGAGAG 641 87 121 Antisense
GAGAGAGGGGAGAGGGGGCCTACCG 69 331 175 Antisense
Sequence Source Affymetrix Proprietary Database