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[172175_x_at]

Description Y61A9LA.I /REP_DB=WormBase Gene ID /WP=CE22683 /CHR=5 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF60841.1
Cluster 6grp_total > 07      4grp_total > 13      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 28
1 2 3 4 range
A 4.2
(-2.5)
A 		1.8
(-3)
A 		2.7
(-2.8)
A 		29.1
(3)
A 		27
B 17.7
(3)
A 		7.4
(-0.8)
A 		1.4
(-3)
A 		7.9
(-0.6)
A 		16
C 4.5
(3)
A 		3.1
(-3)
A 		4
(0.9)
A 		4.3
(2.1)
A 		1
avr 8.8
(0.3) 		4.1
(-2.2) 		2.7
(-3) 		13.8
(3) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 25
1 2 3 4 5 6 range
A 15.7
(3)
A 		2.6
(-2.8)
A 		2.8
(-2.7)
A 		4.2
(-2.1)
A 		2.9
(-2.6)
A 		2.1
(-3)
A 		14
B 1.6
(-2.9)
A 		17.4
(3)
A 		6.6
(-1)
A 		13.8
(1.7)
A 		2.4
(-2.6)
A 		1.3
(-3)
A 		16
C 26.2
(3)
A 		5.7
(-1.9)
A 		3.7
(-2.4)
A 		4.3
(-2.2)
A 		1
(-3)
A 		1.7
(-2.8)
A 		25
avr 14.5
(3) 		8.6
(0.2) 		4.4
(-1.7) 		7.4
(-0.3) 		2.1
(-2.8) 		1.7
(-3) 		13
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 5
1 2 3 4 range
A 1.5
(-1.3)
A 		0.4
(-3)
A 		0.7
(-2.5)
A 		4.3
(3)
A 		4
B 5.7
(3)
A 		1.8
(-1.3)
A 		0.3
(-3)
A 		1.7
(-1.4)
A 		5
C 1.5
(3)
A 		0.9
(-1.5)
A 		1.4
(2.3)
A 		0.7
(-3)
A 		1
avr 2.9
(3) 		1
(-2.4) 		0.8
(-3) 		2.2
(1) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 2.9
(3)
A 		0.9
(-2)
A 		0.6
(-2.8)
A 		1.1
(-1.5)
A 		0.9
(-2)
A 		0.5
(-3)
A 		2
B 0.5
(-3)
A 		5.8
(3)
A 		1.6
(-1.8)
A 		3.7
(0.6)
A 		1
(-2.4)
A 		0.5
(-3)
A 		5
C 9.7
(3)
A 		1.7
(-2.1)
A 		0.9
(-2.6)
A 		0.9
(-2.6)
A 		0.3
(-3)
A 		0.6
(-2.8)
A 		9
avr 4.4
(3) 		2.8
(0.5) 		1
(-2.2) 		1.9
(-0.8) 		0.7
(-2.7) 		0.5
(-3) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172175_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19541
Sequence Type Exemplar sequence
Representative Public ID Y61A9LA.I NCBI
Target Description Y61A9LA.I /REP_DB=WormBase Gene ID /WP=CE22683 /CHR=5 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF60841.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071835(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071835 NCBI Caenorhabditis elegans Y61A9LA.5 (Y61A9LA.5) mRNA, complete cds. 11/11 A 
SNAP00000010093 ENSEMBL cdna:SNAP chromosome:CEL140:V:4556576:4556928:1 11/11 None
GENEFINDER00000010110 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:4556576:4556928:1 11/11 None
Y61A9LA.5 ENSEMBL cdna:known chromosome:CEL140:V:4553686:4556905:1 gene:Y61A9LA.5 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_072621 5/11 Cross Hyb Matching Probes A 
SNAP00000006079 5/11 Cross Hyb Matching Probes None
GENEFINDER00000006093 5/11 Cross Hyb Matching Probes None
C37C3.3 5/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:4556575-4556928(+) 100.0 100.0
chrV:7853281-7853622(+) 92.16 92.16
Public Domain and Genome References
Ensembl Y61A9LA.5
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_504236 Y61A9LA.5 [Caenorhabditis elegans] 0.0
blast AAR12983 Hypothetical protein Y61A9LA.12 [Caenorhabditis elegans] 8.0E-93
blast CAA87099 Hypothetical protein C34C12.1 [Caenorhabditis elegans] ref|NP_497711.1| C34C12.1 [Caenorhabditis elegans] 2.0E-82
blast AAC25860 Hypothetical protein C37C3.3 [Caenorhabditis elegans] ref|NP_505022.1| C37C3.3 [Caenorhabditis elegans] 4.0E-44
blast AAA68771 Hypothetical protein C56C10.3 [Caenorhabditis elegans] ref|NP_495337.1| Temporarily Assigned Gene name family member (tag-309) [Caenorhabditis elegans] 2.0E-33
Protein Domains
Database ID Description E-Value
Pfam IPR005024 EMBL-EBI Snf7 1.4E-23
Pfam IPR009689 EMBL-EBI Protein of unknown function DUF1280 4.2E-6
Pfam IPR005024 EMBL-EBI Snf7 2.2E-15
Sequence
Target Sequence 
>C. ELEGANS:172175_X_AT
ggatagcgaccaagttcgtgatttgatggatgacatagatgaacaacgagaagtggcgaa
ggaaatcgcggatgctatttcaaaccctggctttaacaacgcaattgacgaggccgaatt
tgacgaggccttgctgcgcgagttggtggaatttgaacaggaagcacttgacaaagattt
cattgatgcgagagctcccccagtcacgcttccggatactcccaatattgcacttccagc
ctccagaccgagagctaaag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGATAGCGACCAAGTTCGTGATTTG 122 509 15 Antisense
ATCGCGGATGCTATTTCAAACCCTG 432 37 79 Antisense
CAAACCCTGGCTTTAACAACGCAAT 393 191 95 Antisense
ATTGACGAGGCCGAATTTGACGAGG 194 3 118 Antisense
GCCGAATTTGACGAGGCCTTGCTGC 309 285 127 Antisense
CCTTGCTGCGCGAGTTGGTGGAATT 445 269 143 Antisense
GGAATTTGAACAGGAAGCACTTGAC 380 533 162 Antisense
GATTTCATTGATGCGAGAGCTCCCC 262 429 190 Antisense
GCTTCCGGATACTCCCAATATTGCA 260 303 222 Antisense
GGATACTCCCAATATTGCACTTCCA 655 509 228 Antisense
CCAGCCTCCAGACCGAGAGCTAAAG 5 273 250 Antisense
Sequence Source Affymetrix Proprietary Database