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[172173_x_at]

Description Y73B6BL.A /REP_DB=WormBase Gene ID /WP=CE26274 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAG23460.1
Cluster 6grp_total > 09      4grp_total > 60      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 256
1 2 3 4 range
A 179.1
(1.1)
A 		29.2
(-3)
A 		247.8
(3)
M 		50.6
(-2.4)
A 		219
B 187.1
(-2.4)
A 		284.9
(3)
A 		204.3
(-1.5)
A 		176.4
(-3)
A 		109
C 177.5
(0.9)
A 		228.8
(3)
A 		127.2
(-1.2)
A 		82.7
(-3)
A 		146
avr 181.2
(2.2) 		181
(2.2) 		193.1
(3) 		103.2
(-3) 		90

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 197
1 2 3 4 5 6 range
A 242
(3)
A 		160.4
(-1.9)
A 		142.8
(-3)
A 		143.5
(-3)
A 		182.8
(-0.6)
P 		147.5
(-2.7)
A 		99
B 191.9
(0.8)
A 		130.3
(-1.1)
A 		214.1
(1.5)
A 		264.3
(3)
A 		206.5
(1.2)
P 		67
(-3)
A 		197
C 212.5
(3)
P 		164.3
(0)
A 		145.2
(-1.1)
A 		187.8
(1.5)
A 		208.2
(2.7)
A 		115
(-3)
A 		98
avr 215.5
(3) 		151.7
(-0.6) 		167.4
(0.3) 		198.5
(2) 		199.2
(2.1) 		109.8
(-3) 		106
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 64
1 2 3 4 range
A 65.2
(3)
A 		6.3
(-3)
A 		64.8
(3)
M 		7.4
(-2.9)
A 		59
B 59.7
(1)
A 		70.4
(3)
A 		47.3
(-1.2)
A 		37.6
(-3)
A 		33
C 58.8
(2.2)
A 		65.8
(3)
A 		44.3
(0.5)
A 		13.9
(-3)
A 		52
avr 61.2
(3) 		47.5
(1) 		52.1
(1.7) 		19.6
(-3) 		42

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 59
1 2 3 4 5 6 range
A 44.6
(0.1)
A 		57.1
(3)
A 		31.1
(-3)
A 		36.4
(-1.8)
A 		55.1
(2.5)
P 		35.9
(-1.9)
A 		26
B 66.8
(1.3)
A 		43.4
(-1.1)
A 		52
(-0.2)
A 		70
(1.6)
A 		83.9
(3)
P 		25
(-3)
A 		59
C 78.8
(3)
P 		50.1
(-1.1)
A 		37
(-3)
A 		37.8
(-2.9)
A 		67.4
(1.4)
A 		38.5
(-2.8)
A 		42
avr 63.4
(2.1) 		50.2
(-0.1) 		40
(-1.8) 		48.1
(-0.5) 		68.8
(3) 		33.1
(-3) 		36
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172173_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19235
Sequence Type Exemplar sequence
Representative Public ID Y73B6BL.A NCBI
Target Description Y73B6BL.A /REP_DB=WormBase Gene ID /WP=CE26274 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAG23460.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068587
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000032068 ENSEMBL cdna:SNAP chromosome:CEL140:IV:6483192:6483490:-1 None
SNAP00000002047 ENSEMBL cdna:SNAP chromosome:CEL140:II:13654945:13655243:1 None
Y73B6BL.28 ENSEMBL cdna:known chromosome:CEL140:IV:6483192:6483651:-1 gene:Y73B6BL.28 None
NM_068587 NCBI Caenorhabditis elegans Y73B6BL.28 (Y73B6BL.28) mRNA, complete cds. None
GENEFINDER00000002050 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:13654945:13655243:1 None
GENEFINDER00000033782 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:15715517:15715815:1 None
GENEFINDER00000032108 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:6483192:6483490:-1 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_064469 6/11 Cross Hyb Matching Probes A 
NM_063582 2/11 Cross Hyb Matching Probes A 
SNAP00000021708 1/11 Cross Hyb Matching Probes None
GENEFINDER00000021720 1/11 Cross Hyb Matching Probes None
SNAP00000019823 2/11 Cross Hyb Matching Probes None
GENEFINDER00000019835 2/11 Cross Hyb Matching Probes None
SNAP00000033714 4/11 Cross Hyb Matching Probes None
D2013.2 2/11 Cross Hyb Matching Probes A 
C31C9.4 6/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:6483197-6483973(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y73B6BL.28
Entrez Gene 190657 Entrez gene
WormBase CE27532 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_500988 Y73B6BL.28 [Caenorhabditis elegans] 3.0E-58
blast CAB05696 Hypothetical protein C31C9.4 [Caenorhabditis elegans] ref|NP_496870.2| C31C9.4 [Caenorhabditis elegans] 4.0E-43
blast AAK68594 Hypothetical protein Y73B6BL.28 [Caenorhabditis elegans] 3.0E-40
blast NP_500988 Y73B6BL.28 [Caenorhabditis elegans] 4.0E-40
blast AAK68594 Hypothetical protein Y73B6BL.28 [Caenorhabditis elegans] 4.0E-40
Sequence
Target Sequence 
>C. ELEGANS:172173_X_AT
atggctcagtccatgcatactttcaaatgttttatcgtggcagaagctaaatatgccaac
ctcctccccatgatatcggaatcaaggtcggaggtcgatgttaccgtcaatgcaggactt
tccggtagattcctcgtcacagcctttccaacaatttatcacctcactccacttgcaatt
ccacatgaaatccatactggaatcactgctattcatctccaggaaactctcggacttcta
gttaccggtggccat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGGCTCAGTCCATGCATACTTTCA 284 53 13 Antisense
AAATGTTTTATCGTGGCAGAAGCTA 171 119 37 Antisense
GAAGCTAAATATGCCAACCTCCTCC 462 341 55 Antisense
CTCCTCCCCATGATATCGGAATCAA 563 235 73 Antisense
GGAGGTCGATGTTACCGTCAATGCA 185 517 102 Antisense
GCAGGACTTTCCGGTAGATTCCTCG 328 299 124 Antisense
AGCCTTTCCAACAATTTATCACCTC 96 85 153 Antisense
ACTCCACTTGCAATTCCACATGAAA 314 99 178 Antisense
AATCACTGCTATTCATCTCCAGGAA 273 171 213 Antisense
TCTCCAGGAAACTCTCGGACTTCTA 178 611 228 Antisense
CGGACTTCTAGTTACCGGTGGCCAT 705 233 243 Antisense
Sequence Source Affymetrix Proprietary Database