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[172171_x_at]

Description Y43B11AR.D /REP_DB=WormBase Gene ID /WP=CE24280 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF60571.1
Cluster 6grp_total > 64      4grp_total > 17      6grp_cgc > 56      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 55
1 2 3 4 range
A 7.4
(-1.8)
A 		16.7
(-0.2)
A 		1
(-3)
A 		34.2
(3)
A 		33
B 14.6
(-3)
A 		16.8
(-2.6)
A 		27.4
(-0.5)
A 		45.2
(3)
P 		31
C 0.9
(-3)
A 		26.8
(-0.2)
A 		11.4
(-1.9)
A 		55.9
(3)
M 		55
avr 7.6
(-3) 		20.1
(-1) 		13.3
(-2.1) 		45.1
(3) 		38

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 44
1 2 3 4 5 6 range
A 35.2
(3)
A 		24.3
(0.8)
P 		28
(1.6)
A 		21.9
(0.4)
A 		4.9
(-3)
A 		18
(-0.4)
A 		30
B 15.2
(-0.8)
A 		3.4
(-3)
A 		35.5
(3)
A 		4.5
(-2.8)
A 		21.6
(0.4)
A 		21.2
(0.3)
A 		32
C 1.9
(-3)
A 		9.1
(-2)
A 		23.4
(-0.1)
A 		46
(3)
A 		9.4
(-2)
A 		44.9
(2.9)
M 		44
avr 17.4
(-1.1) 		12.3
(-2.9) 		29
(3) 		24.1
(1.3) 		12
(-3) 		28
(2.6) 		17
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 2.7
(0.1)
A 		3.6
(1.2)
A 		0.3
(-3)
A 		5
(3)
A 		5
B 4.7
(-2.3)
A 		4.1
(-3)
A 		6.3
(-0.6)
A 		9.6
(3)
P 		6
C 0.3
(-3)
A 		7.7
(1.9)
A 		4
(-0.6)
A 		9.4
(3)
M 		9
avr 2.6
(-3) 		5.1
(-0.2) 		3.5
(-2) 		8
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 6.5
(1.2)
A 		8.7
(3)
P 		6.1
(0.8)
A 		5.6
(0.4)
A 		1.5
(-3)
A 		4.4
(-0.6)
A 		7
B 5.3
(0.3)
A 		1.1
(-3)
A 		8.6
(2.8)
A 		1.2
(-2.9)
A 		8.8
(3)
A 		7.9
(2.3)
A 		8
C 0.7
(-3)
A 		2.8
(-2.1)
A 		5.9
(-0.8)
A 		9.2
(0.6)
A 		3
(-2)
A 		15
(3)
M 		14
avr 4.2
(-3) 		4.2
(-3) 		6.9
(0.3) 		5.3
(-1.7) 		4.4
(-2.8) 		9.1
(3) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172171_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19093
Sequence Type Exemplar sequence
Representative Public ID Y43B11AR.D NCBI
Target Description Y43B11AR.D /REP_DB=WormBase Gene ID /WP=CE24280 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF60571.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000030378 ENSEMBL cdna:SNAP chromosome:CEL140:IV:7074014:7074691:-1 11/11 None
GENEFINDER00000030384 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:7073668:7074392:-1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_068699 7/11 Cross Hyb Matching Probes None
Y43B11AR.2 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:7074019-7074332(-) 100.0 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF60571 Serpentine receptor, class g (gamma) protein 50 [Caenorhabditis elegans] ref|NP_501100.2| Serpentine Receptor, class G (gamma) family member (srg-50) [Caenorhabditis elegans] 6.0E-67
blast AAF60571 Serpentine receptor, class g (gamma) protein 50 [Caenorhabditis elegans] ref|NP_501100.2| Serpentine Receptor, class G (gamma) family member (srg-50) [Caenorhabditis elegans] 4.0E-41
blast AAB69903 Serpentine receptor, class g (gamma) protein 53 [Caenorhabditis elegans] ref|NP_503348.1| Serpentine Receptor, class G (gamma) family member (srg-53) [Caenorhabditis elegans] sp|O16974|SRG53_CAEEL Serpentine receptor class gamma-53 (Protein srg-53) 3.0E-37
blast AAB69903 Serpentine receptor, class g (gamma) protein 53 [Caenorhabditis elegans] ref|NP_503348.1| Serpentine Receptor, class G (gamma) family member (srg-53) [Caenorhabditis elegans] sp|O16974|SRG53_CAEEL Serpentine receptor class gamma-53 (Protein srg-53) 4.0E-23
blast CAB03214 Hypothetical protein Y40H7A.8 [Caenorhabditis elegans] emb|CAA22071.1| Hypothetical protein Y40H7A.8 [Caenorhabditis elegans] ref|NP_502827.1| Serpentine Receptor, class G (gamma) family member (srg-51) [Caenorhabditis elegans] 4.0E-18
blast CAB03214 Hypothetical protein Y40H7A.8 [Caenorhabditis elegans] emb|CAA22071.1| Hypothetical protein Y40H7A.8 [Caenorhabditis elegans] ref|NP_502827.1| Serpentine Receptor, class G (gamma) family member (srg-51) [Caenorhabditis elegans] 3.0E-12
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
SNAP00000030378 3 13-35,61-83,88-110
GENEFINDER00000030384 1 30-52
Sequence
Target Sequence 
>C. ELEGANS:172171_X_AT
gtacattcattatggagatgttctaaatttgatgatgacattatcagatatggtctcatt
ctcaatggcgtatatcttgttgatattcgatggaaatgtgcgatctgttataaaaagtaa
acttcccatctcgaaaatggttagaggaagagtttcggacattcaaagctcccag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTACATTCATTATGGAGATGTTCTA 680 459 15 Antisense
GAGATGTTCTAAATTTGATGATGAC 120 397 29 Antisense
GATGACATTATCAGATATGGTCTCA 112 413 48 Antisense
GATATGGTCTCATTCTCAATGGCGT 406 425 61 Antisense
GGTCTCATTCTCAATGGCGTATATC 318 503 66 Antisense
ATTCTCAATGGCGTATATCTTGTTG 375 11 72 Antisense
TATCTTGTTGATATTCGATGGAAAT 289 659 87 Antisense
ATGGAAATGTGCGATCTGTTATAAA 80 53 104 Antisense
AAGTAAACTTCCCATCTCGAAAATG 325 155 129 Antisense
GTTAGAGGAAGAGTTTCGGACATTC 54 445 154 Antisense
AGTTTCGGACATTCAAAGCTCCCAG 426 63 165 Antisense
Sequence Source Affymetrix Proprietary Database