[Home] | [Total List]

[172170_at]

Description Y59H11AR.D /REP_DB=WormBase Gene ID /WP=CE26556 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF59623.1
Cluster 6grp_total > 79      4grp_total > 20      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 88
1 2 3 4 range
A 2.6
(-3)
A 		16.7
(3)
A 		5.5
(-1.8)
A 		3.2
(-2.7)
A 		14
B 39.3
(3)
A 		17.8
(-0.6)
A 		9.5
(-2)
A 		3.2
(-3)
A 		36
C 8.2
(-2.6)
A 		7.8
(-2.6)
A 		2.1
(-3)
A 		90.3
(3)
P 		88
avr 16.7
(-0.5) 		14.1
(-1.1) 		5.7
(-3) 		32.2
(3) 		27

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 42
1 2 3 4 5 6 range
A 15.5
(-0.4)
A 		2.4
(-3)
A 		18.9
(0.3)
A 		2.3
(-3)
A 		32.6
(3)
A 		21.8
(0.9)
A 		30
B 4
(-2.6)
A 		7.8
(-2.1)
A 		1.4
(-3)
A 		2.7
(-2.8)
A 		8.6
(-2)
A 		43.1
(3)
A 		42
C 1.5
(-3)
A 		31.3
(3)
A 		19.4
(0.6)
A 		4.2
(-2.5)
A 		17.3
(0.2)
A 		27.7
(2.3)
A 		30
avr 7
(-2.2) 		13.8
(-0.7) 		13.2
(-0.8) 		3.1
(-3) 		19.5
(0.5) 		30.9
(3) 		28
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 0.9
(-2.2)
A 		3.6
(3)
A 		1.4
(-1.3)
A 		0.5
(-3)
A 		3
B 12.5
(3)
A 		4.4
(-1.1)
A 		2.2
(-2.2)
A 		0.7
(-3)
A 		12
C 2.7
(-2.2)
A 		2.2
(-2.4)
A 		0.7
(-3)
A 		15.2
(3)
P 		15
avr 5.4
(2.9) 		3.4
(-0.1) 		1.4
(-3) 		5.5
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 2.9
(-1.5)
A 		0.9
(-2.8)
A 		4.1
(-0.7)
A 		0.6
(-3)
A 		9.9
(3)
A 		5.3
(0)
A 		9
B 1.4
(-2.6)
A 		2.6
(-2.1)
A 		0.3
(-3)
A 		0.7
(-2.8)
A 		3.5
(-1.8)
A 		16.1
(3)
A 		16
C 0.6
(-3)
A 		9.6
(3)
A 		4.9
(-0.1)
A 		0.9
(-2.8)
A 		5.6
(0.3)
A 		9.3
(2.8)
A 		9
avr 1.6
(-2.4) 		4.4
(-0.7) 		3.1
(-1.5) 		0.7
(-3) 		6.3
(0.5) 		10.2
(3) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 172170_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19114
Sequence Type Exemplar sequence
Representative Public ID Y59H11AR.D NCBI
Target Description Y59H11AR.D /REP_DB=WormBase Gene ID /WP=CE26556 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF59623.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069067(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069067 NCBI Caenorhabditis elegans Y59H11AR.1 (Y59H11AR.1) mRNA, complete cds. 11/11 None
SNAP00000008279 ENSEMBL cdna:SNAP chromosome:CEL140:IV:8603283:8603656:1 11/11 None
Y59H11AR.1 ENSEMBL cdna:known chromosome:CEL140:IV:8603494:8603656:1 gene:Y59H11AR.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:8603499-8603662(+) 94.74 100.0
Public Domain and Genome References
Gene Title
Ensembl Y59H11AR.1
Entrez Gene 190427 Entrez gene
SwissProt Q9N320 EMBL-EBI
WormBase CE26556 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF59623 Hypothetical protein Y59H11AR.1 [Caenorhabditis elegans] ref|NP_501468.1| Y59H11AR.1 [Caenorhabditis elegans] 7.0E-14
blast AAF59623 Hypothetical protein Y59H11AR.1 [Caenorhabditis elegans] ref|NP_501468.1| Y59H11AR.1 [Caenorhabditis elegans] 9.0E-14
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
SNAP00000008279 1 21-43
Sequence
Target Sequence 
>C. ELEGANS:172170_AT
tgcagaaacctgtgatgaatcctaaacaacgaatttttattagaggacttggacttccat
cttcatatgttgaggcccaaaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGCAGAAACCTGTGATGAATCCTAA 557 547 14 Antisense
AACCTGTGATGAATCCTAAACAACG 325 147 20 Antisense
GATGAATCCTAAACAACGAATTTTT 180 411 27 Antisense
GAATTTTTATTAGAGGACTTGGACT 612 321 44 Antisense
TAGAGGACTTGGACTTCCATCTTCA 452 653 54 Antisense
GAGGACTTGGACTTCCATCTTCATA 312 405 56 Antisense
ACTTGGACTTCCATCTTCATATGTT 568 103 60 Antisense
TGGACTTCCATCTTCATATGTTGAG 648 547 63 Antisense
GACTTCCATCTTCATATGTTGAGGC 81 371 65 Antisense
TCCATCTTCATATGTTGAGGCCCAA 430 591 69 Antisense
ATCTTCATATGTTGAGGCCCAAAAA 464 29 72 Antisense
Sequence Source Affymetrix Proprietary Database