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[172169_s_at]

Description Y74C10AL.B /REP_DB=WormBase Gene ID /WP=CE21754 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF60879.1
Cluster 6grp_total > 93      4grp_total > 03      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 159
1 2 3 4 range
A 40.4
(-2.7)
A 		34.6
(-3)
A 		42.4
(-2.6)
A 		155.6
(3)
P 		121
B 38
(2.7)
A 		4.3
(-3)
A 		5.5
(-2.8)
A 		39.6
(3)
A 		35
C 28.4
(-2.3)
A 		16.7
(-2.8)
A 		11.1
(-3)
A 		163.6
(3)
P 		153
avr 35.6
(-2) 		18.5
(-3) 		19.7
(-2.9) 		119.6
(3) 		101

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 54
1 2 3 4 5 6 range
A 34.9
(0.5)
A 		14.4
(-1.8)
A 		32
(0.2)
A 		20
(-1.2)
A 		56.9
(3)
A 		4.3
(-3)
A 		53
B 20.3
(-0.7)
A 		18.4
(-1)
A 		2.8
(-3)
A 		5.2
(-2.7)
A 		48.7
(3)
A 		3
(-3)
A 		46
C 4.5
(-2.6)
A 		30.2
(3)
A 		2.7
(-3)
A 		16.2
(-0.1)
A 		3.5
(-2.8)
A 		29.3
(2.8)
A 		28
avr 19.9
(-1.1) 		21
(-0.8) 		12.5
(-2.9) 		13.8
(-2.6) 		36.4
(3) 		12.2
(-3) 		24
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 27
1 2 3 4 range
A 14.7
(-0.2)
A 		7.5
(-3)
A 		11.1
(-1.6)
A 		22.8
(3)
P 		15
B 12.1
(3)
A 		1.1
(-3)
A 		1.3
(-2.9)
A 		8.4
(1)
A 		11
C 9.4
(-1.6)
A 		4.8
(-2.8)
A 		3.9
(-3)
A 		27.6
(3)
P 		24
avr 12.1
(0) 		4.5
(-3) 		5.4
(-2.6) 		19.6
(3) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 19
1 2 3 4 5 6 range
A 6.4
(-1)
A 		5.1
(-1.5)
A 		7
(-0.8)
A 		5.1
(-1.5)
A 		17.2
(3)
A 		1.1
(-3)
A 		16
B 7.1
(-1)
A 		6.1
(-1.3)
A 		0.7
(-3)
A 		1.4
(-2.8)
A 		19.8
(3)
A 		1.1
(-2.9)
A 		19
C 1.7
(-2.3)
A 		9.2
(2.6)
A 		0.7
(-3)
A 		3.3
(-1.3)
A 		1.1
(-2.7)
A 		9.8
(3)
A 		9
avr 5.1
(-1.6) 		6.8
(-0.6) 		2.8
(-3) 		3.3
(-2.7) 		12.7
(3) 		4
(-2.3) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172169_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18748
Sequence Type Exemplar sequence
Representative Public ID Y74C10AL.B NCBI
Target Description Y74C10AL.B /REP_DB=WormBase Gene ID /WP=CE21754 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF60879.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) Y74C10AL.B
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
Y74C10AL.B Y74C10AL.B /REP_DB=WormBase Gene ID /WP=CE21754 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF60879.1 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:2467226-2467403(+) 100.0 100.0
chrIII:3262684-3262861(+) 100.0 100.0
chrIII:2237712-2237888(+) 94.74 94.74
chrIII:750899-751075(+) 94.74 94.74
chrV:19838110-19838287(-) 100.0 100.0
chrV:19298104-19298281(-) 93.86 93.86
chrV:2679242-2679419(-) 93.86 93.86
chrV:1457793-1457970(-) 93.86 93.86
chrIII:8566043-8566217(-) 96.49 96.49
chrIII:7261234-7261408(-) 96.49 96.49
Sequence
Target Sequence 
>C. ELEGANS:172169_S_AT
gcccgagtttttgattcctgtgaagccgctgggaatggaacgggtgcatcgttcatgggg
agatgttataat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCCCGAGTTTTTGATTCCTGTGAAG 236 259 18 Antisense
GAGTTTTTGATTCCTGTGAAGCCGC 247 399 22 Antisense
GTTTTTGATTCCTGTGAAGCCGCTG 245 447 24 Antisense
TTTGATTCCTGTGAAGCCGCTGGGA 295 667 27 Antisense
TCCTGTGAAGCCGCTGGGAATGGAA 7 595 33 Antisense
GAAGCCGCTGGGAATGGAACGGGTG 666 343 39 Antisense
CGCTGGGAATGGAACGGGTGCATCG 581 245 44 Antisense
GGAACGGGTGCATCGTTCATGGGGA 431 519 54 Antisense
ACGGGTGCATCGTTCATGGGGAGAT 280 95 57 Antisense
GGTGCATCGTTCATGGGGAGATGTT 329 501 60 Antisense
ATCGTTCATGGGGAGATGTTATAAT 608 33 65 Antisense
Sequence Source Affymetrix Proprietary Database