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[172168_x_at]

Description M162.6 /REP_DB=WormBase Gene ID /WP=CE18896 /TR=Q9XUD1 /GB=CAB05252.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 19      4grp_total > 26      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 46
1 2 3 4 range
A 4.5
(-3)
A 		42.2
(3)
A 		15.5
(-1.2)
A 		28.6
(0.8)
A 		38
B 7.4
(-2.5)
A 		3.3
(-3)
A 		30.7
(0.6)
A 		49.4
(3)
A 		46
C 19.3
(2.7)
A 		20.3
(3)
A 		3.1
(-3)
A 		8.4
(-1.2)
A 		17
avr 10.4
(-3) 		21.9
(0.8) 		16.4
(-1) 		28.8
(3) 		18

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 30
1 2 3 4 5 6 range
A 23.1
(1.4)
A 		1.6
(-3)
A 		19.7
(0.7)
A 		2.6
(-2.8)
A 		31.2
(3)
A 		9.4
(-1.4)
A 		30
B 14.9
(2.1)
A 		4.4
(-2.1)
A 		2.1
(-3)
A 		17.1
(3)
A 		7.1
(-1)
A 		7.6
(-0.8)
A 		15
C 5.9
(-1.7)
A 		23.7
(3)
A 		3.3
(-2.4)
A 		9.6
(-0.8)
A 		3.9
(-2.3)
A 		1.2
(-3)
A 		23
avr 14.6
(3) 		9.9
(-0.3) 		8.4
(-1.4) 		9.8
(-0.4) 		14.1
(2.6) 		6.1
(-3) 		9
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 1.6
(-3)
A 		9.2
(3)
A 		4.1
(-1)
A 		4.2
(-0.9)
A 		8
B 2.4
(-2)
A 		0.8
(-3)
A 		7.1
(0.9)
A 		10.5
(3)
A 		10
C 6.4
(3)
A 		5.8
(2.3)
A 		1.1
(-3)
A 		1.4
(-2.7)
A 		5
avr 3.5
(-3) 		5.3
(2.7) 		4.1
(-1.1) 		5.4
(3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 4.3
(-0.5)
A 		0.6
(-3)
A 		4.3
(-0.5)
A 		0.7
(-2.9)
A 		9.4
(3)
A 		2.3
(-1.8)
A 		9
B 5.2
(3)
A 		1.5
(-1.7)
A 		0.5
(-3)
A 		4.5
(2.1)
A 		2.9
(0.1)
A 		2.8
(-0.1)
A 		5
C 2.2
(-1.4)
A 		7.2
(3)
A 		0.8
(-2.6)
A 		1.9
(-1.7)
A 		1.2
(-2.3)
A 		0.4
(-3)
A 		7
avr 3.9
(1.7) 		3.1
(-0.1) 		1.9
(-2.8) 		2.4
(-1.7) 		4.5
(3) 		1.8
(-3) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172168_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12934
Sequence Type Exemplar sequence
Representative Public ID M162.6 NCBI
Target Description M162.6 /REP_DB=WormBase Gene ID /WP=CE18896 /TR=Q9XUD1 /GB=CAB05252.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075434(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075434 NCBI Caenorhabditis elegans M162.6 (M162.6) mRNA, complete cds. 11/11 None
M162.6 ENSEMBL cdna:known chromosome:CEL140:V:19785036:19785224:1 gene:M162.6 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000032756 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:19785035-19785224(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl M162.6
Entrez Gene 187489 Entrez gene
SwissProt Q9XUD1 EMBL-EBI
WormBase CE18896 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB05252 Hypothetical protein M162.6 [Caenorhabditis elegans] ref|NP_507835.1| M162.6 [Caenorhabditis elegans] 1.0E-22
blast CAB05253 Hypothetical protein M162.1 [Caenorhabditis elegans] ref|NP_507837.1| M162.1 [Caenorhabditis elegans] 6.0E-10
Sequence
Target Sequence 
>C. ELEGANS:172168_X_AT
cagccctagtttcaagtgtctcgatagaccacaagggagatggtgtgttaaggcattcta
cgggaacaacaaccatgacgccacagaagcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAGCCCTAGTTTCAAGTGTCTCGAT 387 201 18 Antisense
GCCCTAGTTTCAAGTGTCTCGATAG 689 283 20 Antisense
GTTTCAAGTGTCTCGATAGACCACA 1 451 26 Antisense
GTGTCTCGATAGACCACAAGGGAGA 63 487 33 Antisense
GGGAGATGGTGTGTTAAGGCATTCT 474 495 52 Antisense
GTGTGTTAAGGCATTCTACGGGAAC 569 433 60 Antisense
GTTAAGGCATTCTACGGGAACAACA 461 445 64 Antisense
GCATTCTACGGGAACAACAACCATG 102 297 70 Antisense
CTACGGGAACAACAACCATGACGCC 437 225 75 Antisense
CGGGAACAACAACCATGACGCCACA 531 243 78 Antisense
CAACAACCATGACGCCACAGAAGCC 704 189 84 Antisense
Sequence Source Affymetrix Proprietary Database