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[172167_at]

Description M60.4 /REP_DB=WormBase Gene ID /WP=CE02833 /TR=Q9GYN0 /GB=AAF99992.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 54      4grp_total > 34      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 36
1 2 3 4 range
A 1.8
(-3)
A 		5
(-2.5)
A 		5.9
(-2.3)
A 		37.1
(3)
A 		35
B 10.6
(1.8)
A 		13
(3)
A 		11.3
(2.1)
A 		1.1
(-3)
A 		12
C 0.7
(-3)
A 		25.7
(3)
A 		1
(-2.9)
A 		3.8
(-2.3)
A 		25
avr 4.4
(-3) 		14.6
(3) 		6.1
(-2) 		14
(2.6) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 34
1 2 3 4 5 6 range
A 2.1
(-1.3)
A 		2.2
(-1.1)
A 		5.1
(3)
A 		1.8
(-1.7)
A 		1.6
(-2)
A 		0.9
(-3)
A 		4
B 9.1
(-1.6)
A 		9.5
(-1.5)
A 		35.3
(3)
A 		1.4
(-2.9)
A 		1
(-3)
A 		11.4
(-1.2)
A 		34
C 4.8
(-2.1)
A 		18.1
(2.1)
A 		14.2
(0.9)
A 		20.9
(3)
A 		2.1
(-3)
A 		10.7
(-0.3)
A 		19
avr 5.3
(-1.7) 		9.9
(0) 		18.2
(3) 		8
(-0.7) 		1.6
(-3) 		7.7
(-0.8) 		17
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7
1 2 3 4 range
A 0.7
(-3)
A 		1.1
(-2.5)
A 		1.5
(-2)
A 		5.4
(3)
A 		5
B 3.4
(3)
A 		3.2
(2.6)
A 		2.6
(1.5)
A 		0.2
(-3)
A 		3
C 0.2
(-3)
A 		7.4
(3)
A 		0.3
(-2.9)
A 		0.6
(-2.7)
A 		7
avr 1.4
(-3) 		3.9
(3) 		1.5
(-2.8) 		2.1
(-1.3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 8
1 2 3 4 5 6 range
A 0.4
(-1.7)
A 		0.8
(1)
A 		1.1
(3)
A 		0.5
(-1)
A 		0.5
(-1)
A 		0.2
(-3)
A 		1
B 3.2
(-1)
A 		3.2
(-1)
A 		8.6
(3)
A 		0.4
(-3)
A 		0.4
(-3)
A 		4.3
(-0.1)
A 		8
C 1.8
(-1.6)
A 		5.5
(3)
A 		3.6
(0.6)
A 		4.2
(1.4)
A 		0.7
(-3)
A 		3.6
(0.6)
A 		5
avr 1.8
(-1) 		3.2
(1.2) 		4.4
(3) 		1.7
(-1.2) 		0.5
(-3) 		2.7
(0.4) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 172167_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17295
Sequence Type Exemplar sequence
Representative Public ID M60.4 NCBI
Target Description M60.4 /REP_DB=WormBase Gene ID /WP=CE02833 /TR=Q9GYN0 /GB=AAF99992.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Consensus/Exemplar Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade C annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001029644
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000012329 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:8232382:8236252:-1 None
M60.4b.3 ENSEMBL cdna:known chromosome:CEL140:X:8232186:8236252:-1 gene:M60.4 None
M60.4a ENSEMBL cdna:known chromosome:CEL140:X:8232382:8236252:-1 gene:M60.4 None
NM_001029644 NCBI Caenorhabditis elegans M60.4a (M60.4) mRNA, complete cds. None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:8236179-8238027(-) 100.0 100.0
Public Domain and Genome References
Ensembl M60.4
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAP40520 Hypothetical protein M60.4a [Caenorhabditis elegans] ref|NP_001024815.1| M60.4a [Caenorhabditis elegans] 2.0E-80
blast CAE74862 Hypothetical protein CBG22717 [Caenorhabditis briggsae] 1.0E-75
blast AAP40520 Hypothetical protein M60.4a [Caenorhabditis elegans] ref|NP_001024815.1| M60.4a [Caenorhabditis elegans] 4.0E-75
blast AAP40521 Hypothetical protein M60.4b [Caenorhabditis elegans] ref|NP_001024816.1| M60.4b [Caenorhabditis elegans] pir||T28849 hypothetical protein M60.3 - Caenorhabditis elegans 4.0E-75
blast AAP40521 Hypothetical protein M60.4b [Caenorhabditis elegans] ref|NP_001024816.1| M60.4b [Caenorhabditis elegans] pir||T28849 hypothetical protein M60.3 - Caenorhabditis elegans 7.0E-75
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_001024815.1 4 40-62,72-94,106-128,133-151
M60.4b.3 4 15-37,49-71,81-103,110-128
M60.4a 4 40-62,72-94,106-128,133-151
GENEFINDER00000012329 4 40-62,72-94,106-128,133-151
Sequence
Target Sequence 
>C. ELEGANS:172167_AT
gagactggtttttgacaagcagatttttgagaatggattacctttgaatatcccattgta
tgcaaaattttattacaaaccagaacagatttccactttcttttgttctcaaaagcattt
tgtgcatagatattatactaccatcaatatgccaatcatcaccacaact

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGACTGGTTTTTGACAAGCAGATT 470 393 15 Antisense
TTTTGAGAATGGATTACCTTTGAAT 11 679 39 Antisense
GATTACCTTTGAATATCCCATTGTA 117 431 50 Antisense
TTGAATATCCCATTGTATGCAAAAT 96 703 58 Antisense
GTATGCAAAATTTTATTACAAACCA 498 453 72 Antisense
CAAACCAGAACAGATTTCCACTTTC 632 191 90 Antisense
CAGATTTCCACTTTCTTTTGTTCTC 413 205 100 Antisense
TTGTTCTCAAAAGCATTTTGTGCAT 686 705 117 Antisense
GTGCATAGATATTATACTACCATCA 251 481 136 Antisense
TACTACCATCAATATGCCAATCATC 535 645 150 Antisense
CAATATGCCAATCATCACCACAACT 119 181 159 Antisense
Sequence Source Affymetrix Proprietary Database