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[172166_x_at]

Description AH10.4 /REP_DB=WormBase Gene ID /WP=CE07658 /TR=Q9XVT8 /GB=CAB02684.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 0      6grp_total > 46      4grp_total > 01      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 133
1 2 3 4 range
A 19.3
(-2.8)
A 		24.7
(-2.5)
A 		15.4
(-3)
A 		137.3
(3)
P 		122
B 19.8
(-1.8)
A 		4.7
(-3)
A 		36.3
(-0.5)
P 		80.8
(3)
P 		76
C 35.5
(-1.4)
P 		5.4
(-3)
A 		15.3
(-2.5)
A 		117.1
(3)
P 		112
avr 24.9
(-2.2) 		11.6
(-3) 		22.3
(-2.4) 		111.7
(3) 		100

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 56
1 2 3 4 5 6 range
A 40.2
(3)
M 		33.3
(0.1)
P 		27
(-2.6)
P 		26.1
(-3)
P 		32.9
(-0.1)
P 		39.5
(2.7)
M 		14
B 41.3
(0.3)
P 		29.7
(-1)
P 		51.1
(1.3)
P 		66.7
(3)
P 		10.5
(-3)
A 		42.8
(0.4)
P 		56
C 44.5
(2.2)
P 		48.7
(3)
P 		19.8
(-2.2)
A 		15.4
(-3)
A 		19.7
(-2.2)
A 		30.9
(-0.2)
P 		33
avr 42
(3) 		37.2
(1.6) 		32.6
(0.3) 		36.1
(1.3) 		21
(-3) 		37.7
(1.8) 		21
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 7
(-1.9)
A 		5.4
(-2.5)
A 		4
(-3)
A 		20.1
(3)
P 		16
B 6.3
(-1.1)
A 		1.2
(-3)
A 		8.4
(-0.3)
P 		17.2
(3)
P 		16
C 11.8
(0.4)
P 		1.6
(-3)
A 		5.3
(-1.8)
A 		19.7
(3)
P 		18
avr 8.4
(-0.9) 		2.7
(-3) 		5.9
(-1.8) 		19
(3) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 7.4
(-1.5)
M 		11.8
(3)
P 		5.9
(-3)
P 		6.6
(-2.3)
P 		9.9
(1.1)
P 		9.6
(0.8)
M 		6
B 14.4
(1.5)
P 		9.9
(-0.5)
P 		12.4
(0.6)
P 		17.7
(3)
P 		4.3
(-3)
A 		16
(2.2)
P 		13
C 16.5
(3)
P 		14.9
(2.3)
P 		5
(-2.1)
A 		3.1
(-3)
A 		6.4
(-1.5)
A 		10.4
(0.3)
P 		13
avr 12.8
(3) 		12.2
(2.4) 		7.8
(-2.1) 		9.1
(-0.8) 		6.9
(-3) 		12
(2.2) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172166_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13044
Sequence Type Exemplar sequence
Representative Public ID AH10.4 NCBI
Target Description AH10.4 /REP_DB=WormBase Gene ID /WP=CE07658 /TR=Q9XVT8 /GB=CAB02684.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074099(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074099 NCBI Caenorhabditis elegans AH10.4 (AH10.4) mRNA, complete cds. 11/11 None
AH10.4 ENSEMBL cdna:known chromosome:CEL140:V:14139936:14140228:-1 gene:AH10.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_064243 1/11 Cross Hyb Matching Probes A 
NM_062798 8/11 Cross Hyb Matching Probes A 
GENEFINDER00000021618 6/11 Cross Hyb Matching Probes None
ZK84.4 8/11 Cross Hyb Matching Probes A 
W05H5.2 1/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:503239-503532(+) 77.17 92.69
chrIV:7251447-7251739(-) 67.12 97.72
chrV:14139935-14140228(-) 68.95 100.0
chrII:6008410-6008715(-) 68.49 98.63
Public Domain and Genome References
Gene Title
Ensembl AH10.4
Entrez Gene 353456 Entrez gene
SwissProt Q9XVT8 EMBL-EBI
WormBase CE07658 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB02684 Hypothetical protein AH10.4 [Caenorhabditis elegans] ref|NP_506500.1| AH10.4 [Caenorhabditis elegans] 4.0E-22
blast NP_495199 ZK84.4 [Caenorhabditis elegans] 1.0E-21
Sequence
Target Sequence 
>C. ELEGANS:172166_X_AT
atgcacgagggacctttggaaataagatttttgaagttgtttgatttccctgatttctgt
ccatcgaaagaacttcaggaactccaacaaaggaagaagagaacttgctgcacaacggaa
caatttttaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGCACGAGGGACCTTTGGAAATAA 182 41 13 Antisense
ATAAGATTTTTGAAGTTGTTTGATT 616 25 34 Antisense
AAGTTGTTTGATTTCCCTGATTTCT 54 157 46 Antisense
TTGTTTGATTTCCCTGATTTCTGTC 309 707 49 Antisense
TTTCCCTGATTTCTGTCCATCGAAA 205 671 57 Antisense
GATTTCTGTCCATCGAAAGAACTTC 369 425 64 Antisense
CGAAAGAACTTCAGGAACTCCAACA 408 223 77 Antisense
GAACTTCAGGAACTCCAACAAAGGA 198 345 82 Antisense
GAAGAAGAGAACTTGCTGCACAACG 205 341 105 Antisense
GAACTTGCTGCACAACGGAACAATT 530 349 113 Antisense
GCTGCACAACGGAACAATTTTTAAT 621 295 119 Antisense
Sequence Source Affymetrix Proprietary Database